Improvement of a sample preparation method assisted by sodium deoxycholate for mass‐spectrometry‐based shotgun membrane proteomics†

In current shotgun‐proteomics‐based biological discovery, the identification of membrane proteins is a challenge. This is especially true for integral membrane proteins due to their highly hydrophobic nature and low abundance. Thus, much effort has been directed at sample preparation strategies such as use of detergents, chaotropes, and organic solvents. We previously described a sample preparation method for shotgun membrane proteomics, the sodium deoxycholate assisted method, which cleverly circumvents many of the challenges associated with traditional sample preparation methods. However, the method is associated with significant sample loss due to the slightly weaker extraction/solubilization ability of sodium deoxycholate when it is used at relatively low concentrations such as 1%. Hence, we present an enhanced sodium deoxycholate sample preparation strategy that first uses a high concentration of sodium deoxycholate (5%) to lyse membranes and extract/solubilize hydrophobic membrane proteins, and then dilutes the detergent to 1% for a more efficient digestion. We then applied the improved method to shotgun analysis of proteins from rat liver membrane enriched fraction. Compared with other representative sample preparation strategies including our previous sodium deoxycholate assisted method, the enhanced sodium deoxycholate method exhibited superior sensitivity, coverage, and reliability for the identification of membrane proteins particularly those with high hydrophobicity and/or multiple transmembrane domains.     

On‐line solid‐phase extraction for liquid chromatography–mass spectrometry analysis of pesticides

Public concern about pesticides in food and water has increased dramatically in the last two decades. In order to guarantee consumers’ health and safety, analytical methods that could provide fast and reliable answers without compromising accuracy and precision are required. Sample treatment is probably the most tedious and time‐consuming step in many analytical procedures and, despite the significant advances in chromatographic separations and mass spectrometry techniques, sample treatment is still one of the most important parts of the analytical process for achieving good analytical results. Therefore, over the last years, considerable efforts have been made to simplify the stage and to develop fast, accurate, and robust methods that allow the determination of a wide range of pesticides without compromising the integrity of the extraction process. This review article intends to give a short overview of recently developed on‐line solid‐phase extraction, preconcentration, and clean‐up procedures for the determination of pesticides in complex matrices by liquid chromatography–mass spectrometry techniques.     

异原子配位结构碳基单原子电催化剂结构与性能相关性的研究进展

单原子催化剂是一类以相互孤立的单个金属原子作为催化活性中心的、 具有高原子经济性及高活性的负载型催化剂, 被广泛应用于能源电催化领域. 近年来, 通过使用两种或两种以上原子与活性中心金属原子配位, 构建具有异原子配位结构的单原子材料, 展现了优异的电催化性能. 研究发现, 这种不对称的配位结构有效调控了中心金属原子的电子结构, 优化了催化反应的吸附和脱附能量, 提高了电催化的性能. 本文综合评述了具有异原子配位结构碳基单原子电催化剂的合成策略、 表征技术与方法, 以及在前沿能源电催化应用中的催化剂性能与结构之间的构效关系, 并展望了异原子配位结构碳基单原子电催化剂的研究前景.     

冰冻人血清中尿酸标准物质复制的定值EI北大核心CSCD

为了满足该标准物质的需求,进行了第二次尿酸血清标准物质的复制。针对复制的尿酸血清标准物质,基于单四极杆质谱的液相色谱-同位素稀释质谱法(LC-IDMS),用乙腈沉淀法去除蛋白质,BEH C18色谱柱和电喷雾离子源负离子模式(ESI^(-)),同位素稀释的单点校准法进行定值、均匀性检验、稳定性检验以及不确定度评定等研究。此定值方法经过CCQM-K109(血清中尿酸分析)国际关键比对进行验证。复制的2种不同浓度水平尿酸(肾病患者和正常人)血清标准物质的定值结果分别为(73.5±1.3)μg/g,(47.5±1.1)μg/g,其均匀性和稳定性评估结果良好。     

Recent Progress in Mass Spectrometry-based Metabolomics for Colorectal Cancer

Metabolomics, one of the latest omics technologies, is employed to reveal overall metabolic trajectories, identify disease causative mechanisms and provide information for preventive diagnosis and drug targeting. Cancer is a disease known to alter cellular metabolism and so metabolomics can play an important role in the early diagnosis of cancer and in the evaluation of medical interventions and treatments for cancer. Many metabolomics studies rely on high-sensitive and high-throughput mass spectrometry platforms. In recent years, various mass spectrometry(MS) methodologies have been developed and enriched the scope of metabolite detection, contributing to disease studies, such as diabetes, cancer, and depression. Colorectal cancer is the third most diagnosed cancer worldwide and its incidence ranked third in China. This review focuses on the mass spectrometry technologies in metabolomics and summarizes the progress of metabolomics research in colorectal cancer.     

Vacuum Ultraviolet Free-Electron Laser Photoionization Mass Spectrometry of Alpha-pinene Ozonolysis

\begin{document}$\alpha$\end{document}-pinene is the most abundant monoterpene that represents an important family of volatile organic compounds. Molecular identification of key transient compounds during the \begin{document}$\alpha$\end{document}-pinene ozonolysis has been proven to be a challenging experimental target because of a large number of intermediates and products involved. Here we exploit the recently developed hybrid instruments that integrate aerosol mass spectrometry with a vacuum ultraviolet free-electron laser to study the \begin{document}$\alpha$\end{document}-pinene ozonolysis. The experiments of \begin{document}$\alpha$\end{document}-pinene ozonolysis are performed in an indoor smog chamber, with reactor having a volume of 2 m\begin{document}$^3$\end{document} which is made of fluorinated ethylene propylene film. Distinct mass spectral peaks provide direct experimental signatures of previously unseen compounds produced from the reaction of \begin{document}$\alpha$\end{document}-pinene with O\begin{document}$_3$\end{document}. With the aid of quantum chemical calculations, plausible mechanisms for the formation of these new compounds are proposed. These findings provide crucial information on fundamental understanding of the initial steps of \begin{document}$\alpha$\end{document}-pinene oxidation and the subsequent processes of new particle formation.     

Analysis of hair components by nanoparticle-assisted laser desorption/ionization mass spectrometry imaging

Using a vertical hair-slice section, we compared the components of normal and damaged hair regions using two ionization methods, matrix-assisted laser desorption/ionization and nanoparticle-assisted laser desorption/ionization (Nano-PALDI) mass spectrometry. Nano-PALDI is useful for small-molecule and high spatial resolution (5 μm) analyses due to the lack of noise. Thus, clear images were obtained from thin hair samples. In Nano-PALDI mass spectrometry imaging, cystine and 18-methyleicosanoic acid as endogenous hair components localized in the cuticle and cortex and cuticle of normal hair, respectively. In contrast, both components were absent in damaged hair.     

Trends in the monitoring of legacy and emerging organic pollutants in protected areas

Protected Areas (PAs) are locations for conservation, internationally recognized for their natural, ecological, and/or cultural values. Human presence in PAs is generally limited to minimal or banned exploitation of natural resources. However, different threats to PAs are evident as a result of short and long-range transport of organic pollutants of legacy and emerging concern. There has been a shift of interest in legacy pollutants such as persistent organic pollutants (POPs) to emerging compounds, resulting in a need for improved monitoring strategies in PAs. Here, we highlight the main advances in environmental analytical chemistry for legacy and emerging pollution monitoring in PAs. Trends in sampling, sample preparation and instrumental determination of multiclass organic pollutants in biotic and abiotic matrices are presented and discussed. Here, we considered the most relevant and recent literature regarding organic pollutants in PAs from terrestrial to aquatic landscapes collected within 2015 to the present time frame.     

Recent advances in analytical methodologies based on mass spectrometry for the environmental analysis of halogenated organic contaminants

Halogenated organic contaminants, including legislated and potential persistent organic pollutants and their precursors, represent a major environmental concern due to their hazardous effects in humans and wildlife as well as their ability to bioaccumulate through the food chain, their high resistance to environmental degradation, and their long-range atmospheric transport potential. The monitoring of these compounds in the environment at ultra-trace concentration levels requires highly selective and sensitive analytical methodologies. The lack of reference step-by-step methods led to a high number of reliable determinations depending on analytes, the complexity of the sample, and available instrumentation. Thus, this review article is mainly focused on the last advances in the analytical methodologies for the determination of halogenated organic contaminants. Methodologies regarding sample treatment, chromatographic separation, and mass spectrometry analysis have been reviewed to finally highlight the future perspectives for the improvement of the analytical determinations of these compounds and the throughput of environmental control laboratories in this field.     

Database-assisted global metabolomics profiling of pleural effusion induced by tuberculosis and malignancy

Database-assisted global metabolomics has received growing attention due to its capability for unbiased identification of metabolites in various biological samples. Herein, we established a mass spectrometry (MS)-based database-assisted global metabolomics method and investigated metabolic distance between pleural effusion induced by tuberculosis and malignancy, which are difficult to be distinguished due to their similar clinical symptoms. The present method utilized a liquid chromatography (LC) system coupled with high resolution mass spectrometry (MS) working on full scan and data dependent mode for data acquisition. Unbiased identification of metabolites was performed through mass spectral searching and then confirmed by using authentic standards. As a result, a total of 194 endogenous metabolites were identified and 33 metabolites were found to be differentiated between tuberculous and malignant pleural effusions. These metabolites involved in tryptophan catabolism, bile acid biosynthesis, and β-oxidation of fatty acids, provided non-invasive biomarkers for differentiation of the pleural effusion samples with high sensitivity and specificity.