Flexibility and Rigidity of Proteins and Protein–Pigment Complexes

Proteins may be rigid or flexible to various degrees as required for optimal function. Flexibility of large parts of a protein, which rearrange or move, is particularly interesting and will be discussed in this article. We differentiate between several categories, although the boundaries between them are diffuse: flexibility of peptide segments, order–disorder transitions of spatially contiguous regions, and domain motions. The domains may be flexibly linked to allow rather unrestricted motions or the motions may be constrained to certain modes. The various categories of large-scale flexibility will be illustrated with the following examples: (1) Small protein proteinase inhibitors are rather rigid molecules which provide binding surfaces complementary to their cognate proteases but show also limited segmental flexibility and adaptation. (2) Large plasma proteinase inhibitors exhibit large conformational changes after interaction with proteases probably for regulatory purposes. (3) Pancreatic serine proteases employ a disorder–order transition of their activation domain as a means to regulate enzymic activity. (4) Immunoglobulins show rather unrestricted and also hinged domain motions in different parts of the molecule probably to allow binding to antigens in different arrangements. (5) Citrate synthase adopts open and closed forms by a hinged domain motion to bind substrates and release products and to perform the catalytic condensation reaction, respectively. (6) Riboflavin synthase, a bifunctional multienzyme complex, catalyzes two consecutive reactions by means of two subunits, α and β. The β-subunits form a shell, in which the α-subunits are enclosed. Diffusional motion of the catalytic intermediates is therefore restricted. In addition, rearrangement of the N-terminal segment occurs during the assembly of the β-subunit. In contrast, rigidity is dominant in the structures of the light-harvesting complexes and the photosynthetic reaction centers involved in photosynthetic light reactions. These are large protein–pigment complexes in which the proteins serve as matrices to hold the pigments in the appropriate conformation and relative arrangement. Since motion would contribute to deactivation of the photoexcited states of the pigments and diminish the efficiency of light-energy and electron transfer, the functional role of rigidity is easy to rationalize for these proteins.     

Synthesis and Crystal Structure of Mixed-Ligand Ni(II) Complex of N-(1-Phenyl-3-methyl-4-benzylidene-5-pyrazolone) p-Nitrobezoylhydrazide and Pyridine

A novel mixed-ligand nickel complex, [Ni(PMBP—PNH) (Py)₃], [PMBP—PNH=N-(1-phenyl-3-methyl-4-benzylidene-5-pyrazolone) p-nitrobezoylhydrazide; Py = pyridine], has been synthesized by the hydrothermal method and characterized by elemental analysis, IR spectrum, thermal analysis, and single-crystal X-ray diffraction. The X-ray diffraction reveals that the nickel (II) ion in the title complex is in a slightly distorted octahedral arrangement of the ONO donor atoms of primary ligand PMBP-PNH and three N-donor atoms in the secondary ligand pyridine.     

Structure of Cyclic Aryl Thioester Dimer Based on o-Phthaloyl Dichloride and Bis(4-mercaptophenyl) Sulfide

IntroductionTheadvantageofmacrocyclicoligomersasprecursorsforthepreparationofhighperformancepolymersviaring openingpolymerization (ROP)hassparkedmuchinterestintheareaofadvancedthermoplasticcomposites.1 3Andaseriesofcyclicoligomerssuchascarbonates,4 arylesters ,5,6 ethers,7amides8andsulfides9,10 hasbeensuccessfullysynthesized .Recently ,Nishikuboetal.11reportedakindofnovelmacro cyclicoligomerscontainingthioestergroupspreparedbycon densationofbis(4 mercaptophenyl)sulfidewitharomaticaciddichlo…     

新型尾式硫代苯并噻唑基卟啉化合物的合成与表征

通过不对称的单羟基卟啉化合物、溴代烷烃和巯基苯并噻唑合成了一系列新型硫代苯并噻唑基尾式卟啉化合物, 并采用核磁共振氢谱、碳谱、红外光谱、质谱和元素分析对卟啉化合物的结构进行了表征.     

Synthese und Kristallstruktur von Hydronium-tris-ethylendiamin-cobalt(rhodium)-μ-trichloro-nonachlorotrirhenat(II)-chlorid,H3O[MEn3][Re3Cl12]Cl (M=Co,Rh)

Synthesis and Crystal Structure of Hydronium-tris-ethylenediamine-cobalt(rhodium)-μ-trichloro-nonachlorotrirhenate(III)-chloride, H₃O[MEn₃][Re₃Cl₁₂]Cl (M=Co, Rh) The chlorides H₃O[MEn₃][Re₃Cl₁₂]CI (M = Co, 1 ; Rh, 2 ) crystallize from hydrochloric acid solutions of ReCl₃ and MEn₃ · 3H₂O as deep red hexagonal columns. They are isotypic and crystallize with the hexagonal system (P6 , Z = 1; 1: a = 1010.87(3); c = 794.30(4) pm, R = 0.023, R_w = 0.016; 2: a = 1018.58(3); c = 794.74(4) pm, R = 0.026, R_w = 0.018). The anions [Re₃Cl₁₂]^3? are connected via H₃O₊ cation (C.N. 3). The large channels that run in the [001] direction contain, alternatively, the cations [MEn₃]³⁺ and the lonesome Cl^?-anions     

Darstellung und Kristallstruktur von LnAl3Br12 (Ln = La,Ce, Pr,Nd, Sm,Gd) und thermischer Abbau zu LnBr3

Preparation and Crystal Structure of LnAl₃Br₁₂ (Ln = La, Ce, Pr, Nd, Sm, Gd) and Thermal Decomposition to LnBr₃ LnAl₃Br₁₂ (Ln = La, Ce, Pr, Nd, Sm, Gd) was prepared in crystalline form for the first time. The crystal structures of LaAl₃Br₁₂, PrAl₃Br₁₂, and NdAl₃Br₁₂ were determined on single crystals by X-ray methods. The isotypic compounds crystallize with trigonal symmetry, space group P 3₁12, Z = 3. A structural comparison to lanthanoide chloroaluminates of equal composition is given and thermal decomposition of LnAl₃Br₁₂ (Ln = Nd) to the corresponding lanthanoide tribromide is described.     

Structural Characterization of the Chiral Skeleton Cluster RuCoMo (Co)_8(μ_3-Se ) C_5H_4C (O) C_6H_4C (O)OCH_3

1INTRoDUCTIoNIntenseinterestintransition-metalclusterscontinuesbecausetheyrepresentpos-sibleconceptualbridgesbetweenhomogeneousandheterogeneouscatalystsmoreoveralsobecausetheyrepresentsyntheticchallenges.TheuseofelementsofGroup16ofthePeriodicTableassingleatomligandsforclustergrowthandstabilizationofthemetalcorearenowwellestablished[1i.ThereisanincreasinginterestintheuseofSe-bridgrdclusters,manyofthereactionsofSe2Fe2(CO),andSe2Fe,(CO),havebeenreported"';however,therehasbeenverylittlewor…     

Synthesis and structure of neutral π-arene complex (η6-C6H5Me)U(AlCl4)3

A new neutral -arene complex of trivalent uranium, (⁶-C₆H₅Me)U(AlCl₄)₃ (1), was obtained by the reductive Freidel-Crafts reaction. The crystal structure of 1 was determined by single crystal X-ray diffraction analysis. The U atom in 1 is bound to the C₆H₅Me group by the ⁶ mechanism and is linked to the three AICl₄ groups through two g-CI bridges. The coordination of the U atom is a distorted pentagonal bipyramid in which the center of the arene ring is in one apical position, and the bridging Cl atoms occupy the other vertices.Translated from Izvestiva Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 469–472, February, 1996.     

Syntheses and structural characterizations of Fe_4S_4 cubane-like cluster compounds containing cycloalkylthiolate ligands

In a reaction system consisting of FeCl2,tetrathiometallate and cycloalkylthiolate,two Fe4S4 cubane-like cluster compounds were obtained with the following crystallographic data:(PhCH2NMe32[Fe4S4 (SC5H9)4](Ⅰ),monoclinic space group P21/c,a=1.6327(4),6=1.1229(3),c=2.802 5( 10) nm,β=94.63(2)°,Z=4,and R=0.074; (Et4N)2[Fe4S4(SC6H11)4](Ⅱ),tetragonal space group I42m,a=1.16705(9),b=1.167 06(2),c=2.063 26(5) nm,Z=2,Dabs=1.28 g/cm3,and R=0.078 The participation of cy-cloalkylthiolate ligand does not obviously arouse the change of the Fe4S4 core structure.Meanwhile,the influence of the cation on the structural symmetry of the Fe4S4 cluster dianion is also discussed.     

Hydrogen bonding in 2-hydroxy-benzhydrazide and 2-hydroxy-thiobenzhydrazide. Structural and spectroscopic study

Summary X-ray structural data are reported for 2-hydroxy-benzhydrazide(monoclinic; P2₁/n-C _2h ⁵ ;a=10.569(2) Å,b=11.264(2) Å,c=6.074(1) Å, =98.80(1)°;Z=4;R=0.054) and 2-hydroxy-thiobenzhydrazide (monoclinic; P2₁/n-C _2h ⁵ ;a=14.598(6) Å,b=5.975(2) Å,c=9.286(4) Å, =107.80(3)°;Z=4;R=0.044). In both compounds the phenolic OH groups are intramolecularly hydrogen bonded to the (thio)carbonyl oxygens and sulfurs, respectively; the basic intermolecular association patterns consist of closed six-membered hydrogen bonded dimers which are connected via N-H ... NH₂ hydrogen bonds. The spectral characteristics of the intramolecular O-H...O/S hydrogen bonds (solid state (OH)=2800/2700 cm^–1, CCl₄ solution (OH)=3035/3100 cm^–1, CDCl₃ solution (OH)=11.62/10.56 ppm) are similar to those of corresponding primary and secondary amides. The solid state IR spectra are consistent with hydrogen bonded NH groups and free NH₂ groups, the solution IR spectra indicate free NH₂ as well as free NH groups.

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Wasserstoffbrückenbindung in 2-Hydroxy-benzhydrazid und 2-Hydroxy-thiobenzhydrazid. Strukturelle und spektroskopische Untersuchungen

Zusammenfassung Es werden Röntgenstrukturdaten für 2-Hydroxy-benzhydrazid (monoklin; P2₁/n- C _2h ⁵ ;a=10.569(2) Å,b=11.264(2)Å,c=6.074(1)Å, =98.80(1)°;Z=4;R=0.054) und 2-Hydroxy-thiobenzhydrazid (monoklin; P2₁/n - C _2h ⁵ ;a=14.598(6)Å,b=5.975(2)Å,c=9.286(4)Å, =107.80(3)°;Z=4;R=0.044) berichtet. In beiden Verbindungen bilden die phenolischen OH-Gruppen intramolekulare Wasserstoffbrücken mit den Carbonyl-Sauerstoff-, bzw. den Thiocarbonyl-Schwefel-Atomen. Das intermolekulare Assoziationsmuster wird durch N-H...NH₂ Wasserstoffbrücken bestimmt, die jeweils zwei Moleküle über sechszählige Ringe zu Dimeren verbinden. Die IR- und NMR-spektroskopischen Charakteristika der intramolekularen O-H...O/S Wasserstoffbrücken (kristallin: (OH)=2800/2700 cm^–1, CCl₄-Lösungen: (OH)=3035/3100 cm^–1, CDCl₃-Lösungen: (OH)=11.62/10.56 ppm) sind sehr ähnlich zu denen entsprechender primärer und sekundärer Amide. Die Festkörper-IR-Spektren stehen in Einklang mit assoziierten NH- und freien NH₂-Gruppen, während die Lösungs-IR-Spektren auch auf das Vorliegen freier NH-Gruppen schließen lassen.