Binding of singlet oxygen with a stacked guanine dimer

Geometry optimization calculations were performed using the B3LYP/6‐31+G* method on the complexes of ¹O₂ and ³O₂ molecules with a stacked dimer of planar guanine, varying the distance (D) between the planes of the guanine molecules. In this process, geometries of the guanine molecules were held fixed, D was fixed at different values, while the bond lengths of ¹O₂ and ³O₂ as well as their orientations with respect to the guanine molecules were optimized for each value of D. The complexes in their most stable geometries were solvated in water using the integral equation formalism of the polarized continuum model of the self‐consistent reaction field theory. In gas phase, the most stable complex between ¹O₂ and the guanine dimer (2G.¹O₂) is formed when D is about 6 Å, while the most stable complex between ³O₂ and the guanine dimer (2G.³O₂) is formed when D is about 3.75 Å. In the minimum total energy geometry of 2G.¹O₂, ¹O₂ is located between the guanine molecules, above the imidazole ring of one of them. However, in the minimum total energy geometry of 2G.³O₂, ³O₂ is located outside the stack of guanine molecules, near the amino group of one of them. The solvation calculations showed that in aqueous media, ¹O₂ would bind with the stacked guanine dimer more strongly than in gas phase, while ³O₂ would not bind with the same. The mode of binding of ¹O₂ with the stacked guanine dimer is such that it seems that ¹O₂ would replace one basepair in DNA, as happens in the intercalative mode of binding of drugs and other molecules, and it can lead to the formation of 8‐oxoguanine that has a mutagenic nature. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

New hydrophobic L‐amino acid salts: maleates of L‐leucine,L‐isoleucine and L‐norvaline

Crystals of maleates of three amino acids with hydrophobic side chains [L‐leucenium hydrogen maleate, C₆H₁₄NO₂⁺·C₄H₃O₄⁻, (I), L‐isoleucenium hydrogen maleate hemihydrate, C₆H₁₄NO₂⁺·C₄H₃O₄⁻·0.5H₂O, (II), and L‐norvalinium hydrogen maleate–L‐norvaline (1/1), C₅H₁₁NO₂⁺·C₄H₃O₄⁻·C₅H₁₂NO₂, (III)], were obtained. The new structures contain C₂²(12) chains, or variants thereof, that are a common feature in the crystal structures of amino acid maleates. The L‐leucenium salt is remarkable due to a large number of symmetrically non‐equivalent units (Z′ = 3). The L‐isoleucenium salt is a hydrate despite the fact that L‐isoleucine is a nonpolar hydrophobic amino acid (previously known amino acid maleates formed hydrates only with lysine and histidine, which are polar and hydrophilic). The L‐norvalinium salt provides the first example where the dimeric cation L‐Nva...L‐NvaH⁺ was observed. All three compounds have layered noncentrosymmetric structures. Preliminary tests have shown the presence of the second harmonic generation (SGH) effect for all three compounds.     

Effect of intercalating agents on structure and properties of dimer acid‐based polyamide modified by in situ doping of Na‐montmorillonite

Under the condition of 0.4% (mass), the effects of intercalating agents on conglomeration structure and thermal and mechanical properties of dimer acid‐based polyamide (DAPA) were investigated. The results show that layer‐stripped Na‐montmorillonite (MMT) with octadecyl trimethyl ammonium chloride caused a sharp decrease of content of the γ crystal phase in DAPA, thus bringing out decrease in mechanical properties and increase in IZOD notched impact strength while a sharp increase of content with the γ crystal phase in DAPA modified by Na‐MMT with dioctadecyl dimethyl ammonium chloride. Thus, it brought out a large increase in mechanical properties and a limited increase in IZOD notched impact strength. The decomposition reaction processes of DAPA modified by Na‐MMT and Na‐MMT with octadecyl trimethyl ammonium chloride were one step ranging from 410 to 500°C, respectively. The thermal decomposition reaction processes of DAPA modified by Na‐MMT with dioctadecyl dimethyl ammonium chloride were two steps. Copyright © 2016 John Wiley & Sons, Ltd.     

A halide‐free pyridinium‐substituted η3‐cycloheptatrienide–Pd complex

We report the synthesis and characterization of a novel 4‐(dimethylamino)pyridinium‐substituted η³‐cycloheptatrienide–Pd complex which is free of halide ligands. Diacetonitrile{η³‐[4‐(dimethylamino)pyridinium‐1‐yl]cycloheptatrienido}palladium(II) bis(tetrafluoroborate), [Pd(C₂H₃N)₂(C₁₄H₁₆N₂)](BF₄)₂, was prepared by the exchange of two bromide ligands for noncoordinating anions, which results in the empty coordination sites being occupied by acetonitrile ligands. As described previously, exchange of only one bromide leads to a dimeric complex, di‐μ‐bromido‐bis({η³‐[4‐(dimethylamino)pyridinium‐1‐yl]cycloheptatrienido}palladium(II)) bis(tetrafluoroborate) acetonitrile disolvate, [Pd₂Br₂(C₁₄H₁₆N₂)₂](BF₄)₂·2CH₃CN, with bridging bromide ligands, and the crystal structure of this compound is also reported here. The structures of the cycloheptatrienide ligands of both complexes are analogous to the dibromide derivative, showing the allyl bond in the β‐position with respect to the pyridinium substituent. This indicates that, unlike a previous interpretation, the main reason for the formation of the β‐isomer cannot be internal hydrogen bonding between the cationic substituents and bromide ligands.     

Computational, 1H NMR,and X‐ray structural studies on 1‐arylurazole tetrazane dimers

Nitrogen‐centered urazole radicals exist in equilibrium with tetrazane dimers in solution. The equilibrium established typically favors the free‐radical form. However, 1‐arylurazole radicals bearing substituents at the ortho position favor the dimeric form. We were able to determine the structure of one of the dimers (substituted at both ortho positions with methyl groups), namely 1,2‐(2,4‐dimethylphenyl)‐2‐[2‐(2,4‐dimethylphenyl)‐4‐methyl‐3,5‐dioxo‐1,2,4‐triazolidin‐1‐yl]‐4‐methyl‐1,2,4‐triazolidine‐3,5‐dione, C₂₄H₂₈N₆O₄, via X‐ray crystallography. The experimentally determined structure agreed well with the computationally obtained geometry at the B3LYP/6‐311G(d,p) level of theory. The preferred syn conformation of these 1‐arylurazole dimers results in the two aromatic rings being proximate and nearly parallel, which leads to some interesting shielding effects of certain signals in the ¹H NMR spectrum. Armed with this information, we were able to decipher the more complicated ¹H NMR spectrum obtained from a dimer that was monosubstituted at the ortho position with a methyl group.     

Dimerization of a mixed‐carbene PdII dibromide complex by elemental iodine

A monomeric Pd^II complex bearing a mixed carbocyclic/N‐heterocyclic carbene ligand and two bromides was reacted with an excess of elemental iodine, which resulted in the surprising removal of one bromide ligand and dimerization of the mixed‐carbene complex to form di‐μ‐bromido‐bis{[1‐(cyclohepta‐2,4,6‐trien‐2‐yl‐1‐ylidene‐κC ¹)‐3‐(2,6‐diisopropylphenyl)imidazol‐2‐ylidene]palladium(II)} bis(pentaiodide) dichloromethane monosolvate, [Pd₂Br₂(C₂₂H₂₄N₂)₂](I₅)₂·CH₂Cl₂. The dimeric complex features a slightly distorted square‐planar core of two Pd^II centres bridged by two bromide ligands, which lie in the same plane as the seven‐ and five‐membered rings of the bidentate carbene ligand. The counter‐ions in the single crystal were found to be pentaiodide monoanions featuring their typical V‐shape, whereas for the bulk material, a mixture of Br/I interhalides is proposed.     

Guaiane-type sesquiterpenoid glucosides from Gardenia jasminoides Ellis

Two new guaiane-type sesquiterpenoid glucosides (1 and 2) were isolated from the fruit of Gardenia jasminoides Ellis. Their structures were elucidated to be (1R,7R,10S)-11-O-β-D-glucopyranosyl-4-guaien-3-one (1) and (1R,7R,10S)-7-hydroxy-11-O-β-D-glucopyranosyl-4-guaien-3-one (2) by one- and two-dimensional NMR techniques ((1)H NMR, (13)C NMR, HSQC, HMBC and NOESY), MS, CD spectrometry and chemical methods.     

The effect of the iterative triple and quadruple cluster amplitudes on the adiabatic potential curve in the coupled cluster calculations of the ground electronic state of the Yb dimer

The dissociation energy, equilibrium internuclear distance, and spectroscopic constants for the ¹Σ ground state of the Yb₂ molecule are calculated. The relativistic effects are introduced through generalized relativistic effective core potentials with very high precision. The scalar relativistic coupled cluster method particularly well suited for closed‐shell van der Waals systems is used for the correlation treatment. Extensive generalized correlation basis sets were constructed and used. The relatively small corrections for high‐order cluster amplitudes and spin—orbit interactions are taken into account using smaller basis sets and the spin—orbit density functional theory. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Thermal degradation behavior of polyamides having 2- and 4-hydroxycinnamic acid dimer components

Two new types of polyamides having anti head-to-tail hydroxycinnamic acid dimer component in the main chain were synthesized. Their thermal degradation behavior was investigated by TG-DSC analysis in comparison with those of their model compounds and the polyamides derived from anti head-to-head coumarin dimer. The key reactions in the thermal degradation were clarified to be lactonization and cyclic imide formation. The polyamide, derived from 4-hydroxycinnamic acid dimer and hexamethylenediamine, showed good heat stability. © 1993 John Wiley & Sons, Inc.