Like‐Charge Attraction: A Combined Electrostatic–Hydrodynamic Approach

Abstract

This article discusses the like‐charge attraction of colloidal spheres close to a charged plate and compares results produced by an electrostatic and a hydrodynamic model with experimental data. Hydrodynamic coupling is shown to be the dominating effect, while the electrostatic influence may often be neglected. Some observations, however, can be explained only by means of a combined electrostatic–hydrodynamic model, which is derived in this work. The combined model is able to predict not only the attractive force between particles of similar charge close to a charged plate but also the change to a purely repulsive force once the sphere‐plate distance is further reduced. This prediction matches qualitatively results of experiments reported in the literature.     

First and second coordination spheres in 8-azaxanthinato salts of divalent metal aquacomplexes – Ab initio and DFT study

The hydrogen bonding pattern in complexes of the type [M²⁺(H₂O)₆](dmax)₂ (M = Mn, Ni, Co, Zn, Cd, Hdmax = 1,3-dimethyl-8-azaxanthine), [M²⁺(H₂O)₄(py)₂](dmax)₂ (M = Mn, Co, Zn, Cd, py = pyridine) and [M²⁺(dmax)₂(H₂O)₂(py)₂]·2H₂O (M = Ni, Cu) were studied by ab initio (MP2/LANL2DZ//B3LYP/LANL2DZ) and density functional theory methods (B3LYP/LANL2DZ, B3LYP/6-31G^∗∗ and B3PW91/6-31G^∗∗). The investigation includes a variety of theoretical analyses, which include interaction energy, many body analyses, electron density analysis, topological analysis, Mulliken atomic charges, natural atomic charges and harmonic vibrational analysis. The geometrical parameters and vibrational frequencies of dmax (the mono anion of 1,3-dimethyl-8-azaxanthine), [M²⁺(H₂O)₆] (M = Mn, Ni, Co, Zn, Cd), [M²⁺(H₂O)₄·(py)₂] (M = Mn, Co, Zn, Cd) and the complexes, calculated by the theoretical methods, were compared with the recent X-ray crystallographic results and it was observed that the results are found to agree well with the crystallographic results. The present calculations provide an important physicochemical insight into metal cations with 1,3-dimethyl-8-azaxanthine. The results also reveal the active role of coordinated water molecules in modulating the binding of the cation through a specific network of hydrogen bonds. The topology of the motifs generated by these hydrogen bonds has been characterized, adapting to the second coordination sphere concepts usually applied to the first (monodentate, chelate, and bridge) coordination sphere. The optimized structures of the Cd²⁺, Zn²⁺ and Cu²⁺ complexes further interact among themselves in a less tight fashion to generate three dimensional structures (a tape-like hydrogen bond network). Finally these tape-like hydrogen bond network were optimized using the B3LYP/LANL2DZ basis set.     

Water PMF for predicting the properties of water molecules in protein binding site

Water is an important component in living systems and deserves better understanding in chemistry and biology. However, due to the difficulty of investigating the water functions in protein structures, it is usually ignored in computational modeling, especially in the field of computer‐aided drug design. Here, using the potential of mean forces (PMFs) approach, we constructed a water PMF (wPMF) based on 3946 non‐redundant high resolution crystal structures. The extracted wPMF potential was first used to investigate the structure pattern of water and analyze the residue hydrophilicity. Then, the relationship between wPMF score and the B factor value of crystal waters was studied. It was found that wPMF agrees well with some previously reported experimental observations. In addition, the wPMF score was also tested in parallel with 3D‐RISM to measure the ability of retrieving experimentally observed waters, and showed comparable performance but with much less computational cost. In the end, we proposed a grid‐based clustering scheme together with a distance weighted wPMF score to further extend wPMF to predict the potential hydration sites of protein structure. From the test, this approach can predict the hydration site at the accuracy about 80% when the calculated score lower than ?4.0. It also allows the assessment of whether or not a given water molecule should be targeted for displacement in ligand design. Overall, the wPMF presented here provides an optional solution to many water related computational modeling problems, some of which can be highly valuable as part of a rational drug design strategy. © 2012 Wiley Periodicals, Inc.     

Interactions between apolar,basic and acidic model oils and a calcite surface

Abstract

In this study, the atomic force microscopy colloidal probe technique was employed to investigate the interaction between apolar, basic and acidic model oil probes and a calcite surface in solutions containing different concentrations of NaCl, CaCl₂ and Na₂SO₄. In the presence of SO₄^2?, hydration and structural forces were observed between apolar model oil probes and a calcite surface on approach. Relatively low adhesion forces were observed between the basic model oil probes and the calcite surface, while higher adhesion forces were observed between the acidic model oil probes and the calcite surface. Furthermore, the adhesion forces between the basic model oil probes and the calcite surface significantly increased in the presence of SO₄^2?, while the adhesion force between the acidic model oil probes and the calcite surface decreased in the presence of Ca²⁺ or SO₄^2?. The differences in the adhesion forces are related to electrostatic attraction and ion bridging forces between the model oil probes and the calcite surface.     

Modification of Surface Forces by Metal Ion Adsorption

Abstract

Sorption of ions may lead to variations in interparticle forces and, thus, changes in the stability of colloidal particles. Chemical interactions between metal ions and colloidal particles modify the molecular structure of the surface, the surface charge, and the electrical potential between colloidal particles. These modifications to the surface and to the electrical double layer due to metal ion sorption are reflected in the interaction force between a particle and another surface, which is measured in this study by atomic force microscopy (AFM). Specifically, AFM is used to investigate the sorption of copper ions from aqueous solutions by silica particles. The influence of metal ion concentration and solution ionic strength on surface forces is studied under transient conditions. Results show that as the metal ion concentration is decreased, charge reversal occurs and a longer period of time is required for the system to reach equilibrium. The ionic strength has no significant effect on sorption kinetics. Furthermore, neither metal concentration nor ionic strength exhibits any effect on sorption equilibria, indicating that for the experimental conditions used in this study, the surface sites of the silica particle are fully occupied by copper ions.     

Friccohenics of Continuum and Non‐Continuum Models for Liquid Flow Applied for Heteromolecular Interaction of DNA Bases and Sugars Estimated with Mansingh Equation

Newtonian and non‐Newtonian liquids widely characterize continuum and non‐continuum models for flows, thus, viscous (continuum) and drop wise (non‐continuum) flows of water and aqueous nucleotides (2‐deoxy adenosine‐DOA, thymidine‐TMD) and nucleosides (guanosine monophosphate‐GMP, adenosine triphosphate‐ATP) with integral unites‐2‐deoxy ribose‐DOR (referred as DNA bases and sugars) have been studied with Survismeter. Time data for viscous (t and drop wise (dt) flows along with drop counts (n) for aqueous solutions of 0.4–1.4 millimol (mm) DNA base and sugars with survismetere at 288.15, 293.15, and 298.15 K are measured for viscosities and surface tension, respectively. The t and n are fitted in Mansingh equation for Friccohesity (σ) calculation that determines dipole moment (µ). The t, dt, and n data are measured for water from 15 to 70°C at an interval of 5°C for standard equation for dipole moment calculation. The t, dt and n values decrease with temperature where the σ is directly proportional to μ values with slight increase with compositions and decreases with temperatures. A continuous decrease in μ values with compositions is noted with slightly higher decrease at 288.15 with both millimol and temperature. The higher decrease with temperatures weakens Coulombic forces ((q₁ · q₂)/r², with charges q₁ and q₂, and radii r)) where σ increase.     

Interactions between CdTe quantum dots and DNA revealed by capillary electrophoresis with laser‐induced fluorescence detection

Quantum dots (QDs) are one of the most promising nanomaterials, due to their size‐dependent characteristics as well as easily controllable size during the synthesis process. They are promising label material and their interaction with biomolecules is of great interest for science. In this study, CdTe QDs were synthesized under optimal conditions for 2 nm size. Characterization and verification of QDs synthesis procedure were done by fluorimetric method and with CE. Afterwards, QDs interaction with chicken genomic DNA and 500 bpDNA fragment was observed employing CE‐LIF and gel electrophoresis. Performed interaction relies on possible matching between size of QDs and major groove of the DNA, which is approximately 2.1 nm.     

有机膨润土结构对吡虫啉吸附热力学和动力学的影响机理

为深入了解有机膨润土结构对农药吸附性能的影响机理,论文制备十六烷基三甲基氯化铵(HTMA)载量系列变化的有机膨润土,通过吸附热力学和动力学研究了新烟碱杀虫剂吡虫啉与改性有机膨润土的相互作用和影响农药分子在有机膨润土层间扩散的结构因素。结果显示,季铵盐改性削弱了膨润土片层与吡虫啉的静电结合,但是增强与吡虫啉的疏水相互作用。吡虫啉吸附动力学与有机膨润土层间结构密切相关,低载量(<0.8′CEC)的HTMA对膨润土层间距的影响很小,但是层间堆积密度的增加导致吡虫啉吸附速率常数急剧下降。HTMA载量的进一步增加导致其层间排列方式由单层平铺向双层平铺的转变,层间距急剧增加使得吡虫啉吸附速率常数略有增大。