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111.
112.
Thomas Huber Andrew E. Torda Wilfred F. van Gunsteren 《Journal of computer-aided molecular design》1994,8(6):695-708
Summary The concept of memory has been introduced into a molecular dynamics algorithm. This was done so as to persuade a molecular system to visit new areas of conformational space rather than be confined to a small number of low-energy regions. The method is demonstrated on a simple model system and the 11-residue cyclic peptide cyclosporin A. For comparison, calculations were also performed using simulated temperature annealing and a potential energy annealing scheme. Although the method can only be applied to systems with a small number of degrees of freedom, it offers the chance to generate a multitude of different low-energy structures, where other methods only give a single one or few. This is clearly important in problems such as drug design, where one is interested in the conformational spread of a system. 相似文献
113.
三线性直接分解法分析高维灰色体系 总被引:1,自引:1,他引:1
对于由多个两维测量数据组成的三维阵,本文提出一种新三线性直接分解方法。采用高维PCA分解,从三维阵中直接提取抽象光谱和抽象浓度,再结合QZ算法,唯一地确定混合物中各组分光谱的浓度。该方法可以排除其它未知组分的干扰,适用于高维灰色体系定性定量分析和多点校准。用模拟数据讨论了光谱分离度对该方法的影响,应用于混合维生素B1、B2和B6的荧光分析,求得的光谱和浓度与实验值吻合很好。 相似文献
114.
Brian D. Hudson Ashley R. George Martyn G. Ford David J. Livingstone 《Journal of computer-aided molecular design》1992,6(2):191-201
Summary Molecular dynamics simulations have been performed on a number of conformationally flexible pyrethroid insecticides. The results indicate that molecular dynamics is a suitable tool for conformational searching of small molecules given suitable simulation parameters. The structures derived from the simulations are compared with the static conformation used in a previous study. Various physicochemical parameters have been calculated for a set of conformations selected from the simulations using multivariate analysis. The averaged values of the parameters over the selected set (and the factors derived from them) are compared with the single conformation values used in the previous study. 相似文献
115.
基于PuH_2分子基态(X~7A_1)的分析势能函数,用准经典的Monte-Carlo轨线法 对Pu(~7Fg)+H_2(X~1∑_g~+,0,0)的分子反应动力学过程进行了计算。结果表明 :Pu(~7F_g)与H_2(X~1∑_g~+,0,0)碰撞是弹性碰撞。 相似文献
116.
Three new aromatic diester–dicarboxylic acids containing furan rings, namely, benzofuro[2,3-b]benzofuran-2,9-dicarboxyl-bis-phenyl ester-4,4′-dicarboxylic acid, benzofuro[2,3-b]benzofuran-2,9-dicarboxyl-bis-phenyl ester-3,3′-dicarboxylic acid and benzofuro[2,3-b]benzofuran-2,9-dicarboxyl-bis-naphthyl ester-2,2′-dicarboxylic acid were synthesized by the reaction of benzofuro[2,3-b]benzofuran-2,9-dicarbonyl chloride with 4-hydroxybenzoic acid, 3-hydroxybenzoic acid and 3-hydroxy-naphthalene-2-carboxylic acid, respectively. Diester–dicarboxylic acids were characterized by FT-IR and NMR spectroscopy and elemental analyses. Then, these monomers were converted to aromatic copoly(ester–amide)s by their reaction with various aromatic diamines via the direct polycondensation. These polymers were characterized by viscosity measurements, solubility tests, FT-IR, Ultraviolet and 1H-NMR spectroscopy and thermogravimetry. The polymers with inherent viscosities in the range of 0.16–0.37 dl/g in dimethyl sulfoxide at 30 °C were obtained in high yield. Most of them dissolved readily at room temperature in polar solvents. The synthesized copoly(ester–amide)s possessed glass-transition temperatures from 210–255 °C. The copoly(ester–amide)s exhibited excellent thermal stabilities and had 10% weight loss at temperature above 295 °C under nitrogen atmosphere. 相似文献
117.
118.
E. A. Zheligovskaya 《Journal of Structural Chemistry》2003,44(5):827-835
A computer simulation of proton-ordered ice IX and its proton-disordered analog III (768 molecules, 90 K) was carried out by the molecular dynamics method using Poltev–Malenkov's potential. For ice IX, the differences in the dynamic characteristics of molecules with O(1) and O(2) are much wider than those in the case of ice III. The libration spectrum of ice IX has a number of distinct acute peaks, and the spectrum of ice III is strongly smoothed. These peculiarities are explained by the proton ordering of ice IX and disordering of ice III. The latter is responsible for the great differences in the short- and especially long-range environment of water molecules in ice crystals and hence for the presence of many molecules with different dynamic characteristics. Thus averaging over a large number of different vibrational spectra of molecules leads to a smoothed total spectrum in the case of the proton-disordered crystal modification of ice. 相似文献
119.
120.
B. T. Sutcliffe 《Theoretical chemistry accounts》1974,33(3):201-214
It is shown that in the LCAO-MO-SCF problem, if the molecular orbital orthonormality constraints are introduced in the manner first suggested by Fletcher, then the Hessian of the problem is singular. It is suggested that this singularity may well account for the slow convergence observed using direct energy minimization methods to solve the SCF problem. Ways of avoiding the consequences of this singularity are discussed. 相似文献