Cis-trans-isomerization of cationic-anionic polymethine dyes

The effect of solvent polarity and ion pair formation oncis-trans-isomerization of cationic-anionic polymethine dyes and of related simple cationic and anionic dyes is studied by flash photolysis. The change in the rate constant for reversecis-trans- isomerization of photoisomers due to the interaction of a cation with an anion in an ion pair is observed in nonpolar solvents. A drop in the yield of the photoisomers to zero is observed for a number of cationic-anionic dyes in weakly polar and nonpolar solvents which is possibly due to steric hindrances in the photoisomerization process in ion pairs.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 719–724, April, 1993.     

Electron traps on oxide surfaces: (H+)(e-) pairs stabilized on the surface of 17O enriched CaO.

(H+)(e-) pairs generated at the surface of polycrystalline CaO are analyzed for the first time in terms of the interaction of the unpaired electron spin with the nuclear spin of the 17O anions of the surface. CaO crystals enriched in the 17O isotope are prepared and the corresponding hyperfine coupling constants are measured in electron paramagentic resonance (EPR) spectra. The results are analyzed on the basis of cluster model density functional theory calculations. The computed hyperfine coupling constants for (H+)(e-) pairs formed on the edge, corner, and reverse corner sites of the CaO surface allow a tentative assignment of two observed spectral features to specific morphological surface sites.     

Photochromic crown ethers

An amphiphilic crown-containing styryl dye (1) was synthesized, and the effects of irradiation, temperature, and alkali and alkali-earth metal ions on the conductivity and optical spectra of its solutions in dioctyl phthalate were studied. Compound1 in thetrans-form almost completely exists as ion pairs (IP). Irradiation at a long-wavelength absorption maximum (λ_max) results in a reversible increase in the conductivity and, hence, a degree of dissociation of IP (α); these parameters decrease when complexes with metal ions are formed. The relaxation times for the photoinduced conductivity coincide with a decrease in the extinction within experimental error in the 20–60°C temperature range. The photoinduced increase in α is caused bytrans—cis-isomerization and an increase in steric hindrances for the interaction of the ClO₄ ⁻ anion with the N⁺ atom of benzothiazolium in thecis-form of1. The activation energies for the darkcis—trans-relaxation, absolute α values, and thermodynamic parameters of dissociation of IP in thetrans-form, as well as the α values in a photostationary mixture ofcis—trans-isomers, were estimated. The decrease in α after binding with metal ions is likely caused by the redistribution of the positive charge to benzothiazolium through the conjugated system of1. Correlations between the decrease in conductivity (decrease in α) and the hypsochromic shift Δλ_max after the formation of complexes between1 and metal ions were observed. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1296–1301, July, 1997.     

Ion pairing, H-bonding, and π–π interactions in copper(II) complex-organo-networks derived from a proton-transfer compound of the 1,10-phenanthroline-2,9-dicarboxylic acid

The one-pot reaction between the novel proton transfer compound (pydaH₂)²⁺(phendc)²⁻, LH₂, and Cu(II) afforded the compounds (pydaH)₂[Cu(phendc)₂]·10H₂O, 1, and (pydaH)₂[Cu(phendc)(phendcH)]₂·5H₂O, 2, where pyda=2,6-diaminopyridine, and phendcH₂=1,10-phenanthroline-2,9-dicarboxylic acid. The single crystal X-ray diffraction analysis of 1 and 2 revealed that these are two novel self-assembled 3D Cu(II) complex-organo-networks, in which (pydaH)⁺ ions and [Cu(phendc)₂]²⁻ or complex units are held together by ion pairing, H-bonding, and π–π interactions. Magnetic measurements over the temperature range 1.8–310 K revealed no significant magnetic coupling between Cu(II) centers in 1 or 2.     

The mixed valent tellurate SrTe3O8: Electronic lone pair effect of Te

A novel mixed valent tellurium oxide, SrTe₃O₈, has been synthesized and its crystal structure was determined ab initio from powder X-ray diffraction data. This oxide, which crystallizes in a tetragonal unit-cell, P4₂/m space group, with very close a and c cell parameters (6.8257(1) and 6.7603(1) Å, respectively), exhibits a very original structure built up of corner-sharing TeO₆ (Te⁶⁺) octahedra and Te₂O₈ (Te⁴⁺) twin-pyramidal units. The latter ones form [Te₃O₈]_∞ chains running along the [001] and the [110] directions. Besides the four sided tunnels where the Sr²⁺ cations are located, there are very large four sided tunnels running along the c-axis which are obstructed by the electronic lone pairs of the Te⁴⁺ cations.     

On-channel base stacking in microchip capillary gel electrophoresis for high-sensitivity DNA fragment analysis

We evaluated a novel strategy for high-sensitivity DNA fragment analysis in a conventional glass double-T microfluidic chip. The microchip allows for a DNA on-channel concentration based on base stacking (BS) with a microchip capillary gel electrophoretic (MCGE) separation step in a poly(vinylpyrrolidone) (PVP) sieving matrix. Depending if low conductivity caused a neutralization reaction between the hydroxide ions and the run buffer component Tris+, the stacking of DNA fragments were processed in the microchip. Compared to a conventional MCGE separation with a normal electrokinetic injection, the peak heights of 50-2650-base pair (bp) DNA fragments on the MCGE-BS separation were increased 3.9-8.0-fold. When we applied the MCGE-BS method to the analysis of a clinical sample of bovine theileria after PCR reaction, the peak height intensity of the amplified 816-bp DNA fragment from the 18S rRNA of T. buffeli was enhanced 7.0-fold compared to that of the normal injection method.     

Molecular modeling on recognition of sheared and normal DNA by novel metal complex Λ- and Δ-[Co(phen)2hpip]

Recognition of sheared and normal DNA by a novel metal complex [Co(phen)₂hpip]³⁺ (phen=1,10-phenanthroline, HPIP=2-(2-hydroxyphenyl)imidazole[4,5-f][1,10]phenanethroline) is studied by molecular modeling. Calculating results indicate that, this complex can specifically recognize DNA segment of sequence –MMNNMM– (M means mismatch base pairs and N means normal base pairs). Intercalating from minor groove between the middle normal duplex into the sheared DNA with the depth of 1.2 nm is of preference and enantioselectivity is observed. Comparison on the two DNA structures of optimal conformation and analysis on the interaction between DNA and the two tail ligands of the complex show that, the effect of the two neighboring mismatch duplexes on the structure of the middle normal base pairs and the steric interaction between the mismatch duplexes and the two tail ligands of the complex are the essential reason to the segment specificity. Investigation on the detailed energy terms indicate that, in effecting enantioselectivity, the electrostatic distribution of the complex is in the majority and steric interaction is at the next place. But, steric interaction is surely the only factor determining the intercalating from minor groove.     

Optochemical Sensor for Ammonia Based on a Lipophilized pH Indicator in a Hydrophobic Matrix

Abstract

An optical sensor for the determination of ammonia in water based on ion pairing has been investigated. A pH-sensitive dye is immobilized as an ion pair in a silicone matrix. The colour of the dye changes from yellow to blue depending on the concentration of ammonia in the sample solution. This change is reversible. The concentration of ammonia can be determined by measuring the transmittance at a given wavelength.

All measurements were performed with a dual-beam optical meter. The measurement range was from 5.9 × 10^?7 to 1 × 10^?3 M (0.01 to 17 mg/l) in 0.1 M phosphate buffer of pH 8. The detection limit was 10 μg/l. The response times at a flow rate of 2.5 ml/min were 4 min for t₉₀ and 10 min for t₁₀₀ at a change from 41.9 to 82.5 μM ammonia and 12 min for t₉₀ and 48 min for t₁₀₀ at a change from 160 to 0 μM ammonia. The operational lifetime of the ammonia sensor was limited to a period of a few days only. A continuous decrease in baseline signal and relative signal change was observed over the whole measurement. The storage stability was more than 10 months (dry). With respect to possible application of the ammonia sensor to environmental analysis, the influence of pH, typical interferences, such as amines and various detergents on the sensor response was investigated. No interference due to pH was observed in the range from pH 5 to pH 9. With methyl- and ethylamine the response was not completely reversible. The sensor was affected by cationic detergents, but not by anionic or neutral detergents.