A preliminary 3D model for cytochrome P450 2D6 constructed by homology model building

Summary A homology model building study of cytochrome P450 2D6 has been carried out based on the crystal structure of cytochrome P450 101. The primary sequences of P450 101 and P450 2D6 were aligned by making use of an automated alignment procedure. This alignment was adjusted manually by matching -helices (C, D, G, I, J, K and L) and -sheets (3/4) of P450 101 that are proposed to be conserved in membrane-bound P450s (Ouzounis and Melvin [Eur. J. Biochem., 198 (1991) 307]) to the corresponding regions in the primary amino acid sequence of P450 2D6. Furthermore, -helices B, B and F were found to be conserved in P450 2D6. No significant homology between the remaining regions of P450 101 and P450 2D6 could be found and these regions were therefore deleted. A 3D model of P450 2D6 was constructed by copying the coordinates of the residues from the crystal structure of P450 101 to the corresponding residues in P450 2D6. The regions without a significant homology with P450 101 were not incorporated into the model. After energy-minimization of the resulting 3D model of P450 2D6, possible active site residues were identified by fitting the substrates debrisoquine and dextrometorphan into the proposed active site. Both substrates could be positioned into a planar pocket near the heme region formed by residues Val³⁷⁰, Pro³⁷¹, Leu³⁷², Trp³¹⁶, and part of the oxygen binding site of P450 2D6. Furthermore, the carboxylate group of either Asp¹⁰⁰ or Asp³⁰¹ was identified as a possible candidate for the proposed interaction with basic nitrogen atom(s) of the substrates. These findings are in accordance with a recently published predictive model for substrates of P450 2D6 [Koymans et al., Chem. Res. Toxicol., 5 (1992) 211].     

α, α'-二胺基二苄基硒醚的合成

本文以苯骈三氮唑、胺和苯甲基醛为原料,发现Mannich反应,生成胺烷基化的苯骈三氮唑衍生物。在此衍生物中,苯骈三氮唑基是亲核取代反应的良好离去基团,易被强亲核试剂的硒负离子取代,生成对称α,α'-二胺基二苄基硒醚。反应易进行,产率较高,产物均为固体,易提纯。这是合成含氮原子的对称硒醚的较好方法。     

Photochemically induced fluorescence investigation of aβ-cyclodextrin: Azure A inclusion complex and determination of analytical parameters

The photooxidation of Azure A and fluorescence properties of Azure A and its photoproduct have been investigated in aqueous media and in the presence of-cyclodextrin (-CD). The fluorescence intensity of the complex formed between the photoproduct and -CD was found to be three times higher than that of the uncomplexed Azure A photoproduct. A complex formation constant of 110±40 M^–1 was calculated using the Benesi-Hildebrand treatment of the fluorescence emission data. Although the stoichiometry of the Azure A photoproduct: -CD complex was found to be 1: 1, it seems that the Azure A structure is only partially included. Calibration graphs were plotted for the free Azure A photoproduct and the photogenerated product included in -CD. The analytical parameters and quantification limits were determined.     

The thermodynamics of mixing C6 and C7 compounds with a bicyclic compound at infinite dilution

The activity coefficients at infinite dilution have been measured at 25°C for cyclohexane, cyclohexene, 1,3-cyclohexadiene, 1,4-cyclohexadiene, benzene, n-hexane, 1-hexene, 1-hexyne, n-heptane, 1-heptene and 1-heptyne in decahydronaphthalene, bicyclohexyl, 1,2,3,4-tetrahydronaphthalene and cyclohexylbenzene. These results, together with previously determined H _m ^E and V _m ^E have been used to calculate the partial molar excess thermodynamic properties of mixing at infinite dilution.     

Crystallochemistry of some new niobium bromides with (Nb6Br18) units: Structures of CsErNb6Br18 and Cs2EuNb6Br18

Two new series of Nb₆ bromides, CsRENb₆Br₁₈ (RE = all the lanthanides excepted Eu and Yb, + Y) (type H ) and M₂RENb₆Br₁₈ (M = Cs, Rb, Tl; RE = Eu, Yb) (type R ) have been isolated. The crystal structures of CsErNb₆Br₁₈ and Cs₂EuNb₆Br₁₈, isotypic with the corresponding chlorides, have been determined by single crystal X-ray diffraction data. The (Nb₆Br₁₈) intra-unit strength is related to the nature and the charge of the counter cation. A comparison between the corresponding chlorides and bromides series, based on the chemical properties and the size of the halogen is discussed.     

2,6-二甲基吡啶在Y型分子筛的Bronsted和Lewis酸中心上的吸附动力学

２，６—二甲基吡啶在Ｙ型分子筛的Ｂｒｏｎｓｔｅｄ和Ｌｅｗｉｓ酸中心上的吸附动力学董玉林，杨孔章（山东大学胶体与界面化学研究所，济南２５０１００）关键词Ｙ型分子筛，酸中心，Ｌｅｗｉｓ酸中心，２，６—二甲基吡啶，吸附动力学沸石分子筛是一类固体酸催化剂，在...     

Chiral resolution of diphenylalanine by high-performance liquid chromatography on a crown-ether-based chiral stationary phase and by NMR spectroscopy

Summary The enantiomers of diphenylalanine (DPA) were well separated by chiral HPLC and NMR spectroscopy on the chiral stationary phase (CSP) derived from (18-crown-6)-2,3,11,12-tetracarboxylic acid (18-C-6-TA). The chromatographic parameters such as separation factors and retention times were greatly influenced by the mobile phase conditions. The (+)-18-C-6-TA used in the CSP was also employed as a chiral solvating agent for the enantiodiscrimination of the DPA enantiomers by NMR spectroscopy. The proton of the DPA analyte showing the chemical shift nonequivalences was used in determining the enantiomeric composition of the analyte.     

[3,4]-annulated pyrroles 1. Polynuclear heterocyclic systems based on pyrrolo[3,4-d]pyrimidine-2,4-dione

The intramolecular electrophilic substitution in 6-functionalized 1,3-dimethyl-1H-pyrrolo[3,4-d]pyrimidine-2,4(3H,6H)-diones was used for the synthesis of pyrimido[4′,5′:3,4]-pyrrolo[1,2-a]quinoxaline-8,10(7H,9H)-dione, pyrimido[4′,5′:3,4]pyrrolo[2,1-c][1,2,4]benzo-triazine-8,10(7H,9H)-dione, and 2H-pyrimido[4′,5′:3,4]pyrrolo[1,2-a]indole-2,4,11(1H, 3H)-trione derivatives. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2180–2185, December, 2006.     

Determination of the enthalpy of fusion of K3TaF8 and K3TaOF6

The areas of the fusion and crystallization peaks of K₃TaF₈ and K₃TaOF₆ have been measured using the DSC mode of the high-temperature calorimeter (SETARAM 1800 K). On the basis of these quantities and the temperature dependence of the used calorimetric method sensitivity, the values of the enthalpy of fusion of K₃TaF₈ at temperature of fusion 1039 K: Δ_fusH_m(K₃TaF₈; 1039 K) = (52 ± 2) kJ mol⁻¹ and of K₃TaOF₆ at temperature of fusion 1055 K: Δ_fusH_m(K₃TaOF₆; 1055 K) = (62 ± 3) kJ mol⁻¹ have been determined.