蛋白质中新型赖氨酸翻译后修饰的结构简介

近年来各种新型蛋白质赖氨酸翻译后修饰被逐渐发现。这些翻译后修饰在蛋白质组中广泛存在,具有高度的结构多样性,并对染色体结构和基因表达具有重要的表观遗传调控作用。本文将从化学的角度对这些新型赖氨酸翻译后修饰的发现与结构特点进行简述,以期对教学与科研有帮助。     

An improved system for data acquisition and analysis for viscoelastic measurements of dilute macromolecular solutions with the modified birnboim-schrag multiple lumped resonator

A new system of data acquisition and analysis has been developed for the modified Birnboim-Schrag multiple lumped resonator apparatus which is used to measure the viscoelastic properties of long-chain macromolecules in dilute solution. The modifications to the original apparatus include improved temperature control and vibration isolation. The original theory has been reworked so that each resonance mode can be characterized by a greater number of data points. The entire data acquistion/processing system is automated and placed under computer control; a correlation for mode coupling is derived. The modifications result in improved precision in the measured viscoelastic moduli and increased instrumental reliability.     

A novel reactivity of SeO(2) with 1,3-dienes: formation of syn 1,2- and 1,4-diols via a facile C-Se bond oxidation

[reaction: see text] A novel reaction between 1,3-dienes and selenium dioxide to give syn 1,2- and 1,4-diol cyclic selenites was studied in detail. This study indicates that an initial concerted [4 + 2] cycloaddition followed by a stereospecific carbon-selenium bond oxidation is involved in this unprecedented syn dihydroxy addition reaction mediated by selenium dioxide.     

The role of radicals in enzymatic processes

Research on the mechanism of action of coenzyme B12, adenosylcobalamin, as a graduate student introduced the author to the field of organic free radicals in enzymology. Twenty years later, related work on S-adenosylmethionine (SAM) as a "poor man's coenzyme B12" was initiated in a detailed analysis of the mechanism of action of lysine 2,3-aminomutase (LAM). The interconversion of L-lysine and L-beta-lysine is catalyzed by LAM, which requires SAM, pyridoxal-5'-phosphate (PLP), and a [4Fe-4S] cluster as coenzymes. The mechanism of this reaction has been delineated as a radical isomerization, in which radical formation is initiated by the [4Fe-4S]-dependent cleavage of the SAM into methionine and the 5'-deoxyadenosyl radical. The mechanism of this process is discussed, together with the role of this radical in hydrogen abstraction from lysine to initiate the substrate radical isomerization. The chemistry underlying the functions of SAM, PLP, and [4Fe-4S] in the action of LAM is novel in all respects, except for the formation of a lysine-PLP aldimine at the active site. Of the four free radicals in the mechanism, three have been characterized by EPR spectroscopy. In the suicide inactivation of adenosylcobalamin-dependent dioldehydrase (DDH) by glycolaldehyde, the formation of cob(II)alamin and 5'-deoxyadenosine is accompanied by the conversion of glycolaldehyde to cis-ethanesemidione radical at the active site. The cis-ethanesemidione radical has been characterized by EPR spectroscopy. Its exceptional stability at the active site is the basis for the inactivation of DDH by glycolaldehyde.     

A Quantitative Regularity Estimate for Nonnegative Supersolutions of Uniformly Parabolic Equations

This note establishes an interior quantitative lower bound for nonnegative supersolutions of fully nonlinear uniformly parabolic equations. The result may be interpreted as a quantitative version of a growth lemma established by Krylov and Safonov for nonnegative supersolutions of linear uniformly parabolic equations in nondivergence form. Our approach is different, and follows from an application of a reverse Holder inequality. The result is the parabolic analogue of an elliptic regularity estimate established by Caffarelli, Souganidis, and Wang in the stochastic homogenization of fully nonlinear uniformly elliptic equations.     

Multi-Model Communication and Data Assimilation for Mitigating Model Error and Improving Forecasts

Models for weather and climate prediction are complex, and each model typi-cally has at least a small number of phenomena that are poorly represented, such as perhaps the Madden-Julian Oscillation (MJO for short) or El Ni\~{n}o-Southern Oscillation (ENSO for short) or sea ice. Furthermore, it is often a very challenging task to modify and improve a complex model without creating new deficiencies. On the other hand, it is sometimes possible to design a low-dimensional model for a particular phenomenon, such as the MJO or ENSO, with significant skill, although the model may not represent the dynamics of the full weather-climate system. Here a strategy is proposed to mitigate these model errors by taking advantage of each model''s strengths. The strategy involves inter-model data assimilation, during a forecast simulation, whereby models can exchange information in order to obtain more faithful representations of the full weather-climate system. As an initial investigation, the method is examined here using a simplified scenario of linear models, involving a system of stochastic partial differential equations (SPDEs for short) as an imperfect tropical climate model and stochastic differential equations (SDEs for short) as a low-dimensional model for the MJO. It is shown that the MJO prediction skill of the imperfect climate model can be enhanced to equal the predictive skill of the low-dimensional model. Such an approach could provide a route to improving global model forecasts in a minimally invasive way, with modifications to the prediction system but without modifying the complex global physical model itself.     

Analysis of finite element methods for second order boundary value problems using mesh dependent norms

This paper presents a new approach to the analysis of finite element methods based onC ⁰-finite elements for the approximate solution of 2nd order boundary value problems in which error estimates are derived directly in terms of two mesh dependent norms that are closely ralated to theL ₂ norm and to the 2nd order Sobolev norm, respectively, and in which there is no assumption of quasi-uniformity on the mesh family. This is in contrast to the usual analysis in which error estimates are first derived in the 1st order Sobolev norm and subsequently are derived in theL ₂ norm and in the 2nd order Sobolev norm — the 2nd order Sobolev norm estimates being obtained under the assumption that the functions in the underlying approximating subspaces lie in the 2nd order Sobolev space and that the mesh family is quasi-uniform.     

A correction to and improvement of ‘Strong approximations of some biometric estimates under random censorship’

Summary In the proof of the main result of the original paper there is an error. Instead of repairing that proof to get just the original result, at the critical spot we improve the proof and obtain a much better result. In particular, we approximate the product-limit and empirical cumulative hazard processes by suitable copies of the corresponding limiting Gaussian processes with rates of approximation that on appropriate fixed half lines reduce to the rates of Komlós, Major and Tusnády for the uncensored empirical process.     

Weighted inequalities for real-analytic functions in ℝ<Superscript>2</Superscript>

Let ƒ and g be real-analytic functions near the origin in ℝ². Given 1 < p < ∞, we obtain a characterization of the set of positive numbers ∈ and δ that ensures

A Relaxation Scheme for Solving the Boltzmann Equation Based on the Chapman-Enskog Expansion

Abstract In [16] a visco-elastic relaxation system, called the relaxed Burnett system, was proposed by Jinand Slemrod as a moment approximation to the Boltzmann equation. The relaxed Burnett system is weaklyparabolic, has a linearly hyperbolic convection part, and is endowed with a generalized eotropy inequality. Itagrees with the solution of the Boltzmann equation up to the Burnett order via the Chapman-Enskog expansion. We develop a one-dimensional non-oscillatory numerical scheme based on the relaxed Burnett system forthe Boltzmann equation. We compare numerical results for stationary shocks based on this relaxation scheme,and those obtained by the DSMC (Direct Simulation Monte Carlo), by the Navier-Stokes equations and bythe extended thermodynamics with thirteen moments (the Grad equations). Our numerical experiments showthat the relaxed Burnett gives more accurate approximations to the shock profiles of the Boltzmann equationobtained by the DSMC, for a range of Mach numbers for hypersonic flows, th