Manipulating the enone moiety of levoglucosenone: 1,3-Transposition reactions including ones leading to isolevoglucosenone

The manipulation of the enone moiety associated with the biomass-derived, homochiral and now abundant compound levoglucosenone (1) is described. While the trichloroacetimidates derived from the allylic alcohols 3 and 4 failed to engage in Overman-type rearrangements, certain ester derivatives reacted in the presence of Pd[0]-catalysts to give regio-isomeric mixtures of β,γ-unsaturated malonates or ketones, the structures of which were confirmed by single-crystal X-ray analyses. In other sequences involving 1,3-transposition reactions, an operationally simple means for converting compound 1 into isolevoglucosenone (2) is described.

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Observation of a one-dimensional adsorption site on carbon nanotubes: adsorption of alkanes of different molecular lengths

Three well-defined adsorption sites have been found on opened single-wall carbon nanotubes by temperature-programmed desorption measurements for several alkanes. A series of linear chain alkanes from pentane to nonane, as well as a branched alkane molecule, 2,2,4-trimethylpentane, were used to elucidate the effect of molecular length on the capacity of the adsorption sites. The two highest-energy adsorption sites were assigned as the nanotube interior sites and groove sites on the outside of the nanotube bundles. Hybrid Monte Carlo simulations were performed to probe the molecular-level details of adsorption. Both in experiments and in the simulation, the groove sites were seen to behave as one-dimensional adsorption space, demonstrating an inverse dependence of capacity on the length of the adsorbed molecule. In contrast, the capacity of the internal sites was found to depend inversely on the volume occupied by the molecule.     

Oxidative addition of the imidazolium cation to zerovalent Ni, Pd, and Pt: a combined density functional and experimental study

Oxidative addition of different imidazolium cations to zerovalent group 10 metals, to afford heterocyclic carbene complexes, has been investigated by both density functional theory (DFT) and experimental studies. The theoretical analysis shows that addition of imidazoliums to Pt(0) and Ni(0) is more exothermic than to Pd(0), and Ni(0) is predicted to react with a much lower barrier than either Pt(0) or Pd(0). Strongly basic supporting ligands on the metal, as well as cis-chelating ligands, increase the exothermicity of the reaction and also lower the activation barrier. The addition of 2-H imidazoliums is easier and more exothermic than addition of 2-alkylimidazoliums, and a halo-imidazolium is expected to further lower the barrier to oxidative addition and increase the exothermicity. The DFT results show that all three of the metals should be able to oxidatively add imidazolium cations under appropriate conditions. Experimental studies confirmed that oxidative addition is possible, and a number of Pt- and Pd-carbene complexes were prepared via oxidative addition of imidazolium salts to M(0) precursors. Most significantly, oxidative addition of 2-H azolium salts was found to readily occur, and the reaction of 1,3-dimethylimidazolium tetrafluoroborate with Pt(PPh(3))(2) and Pt(PCy(3))(2) affords [PtH(dmiy)(PPh(3))(2)]BF(4) (10) and [PtH(dmiy)(PCy(3))(2)]BF(4) (11), while reaction between 3,4-dimethylthiazolium tetrafluoroborate and Pt(PCy(3))(2) yields [PtH(dmty)(PCy(3))(2)]BF(4) (12) (dmiy = 1,3-dimethylimidazolin-2-ylidene, dmty = 3,4-dimethylthiazolin-2-ylidene). Addition of 2-iodo-1,3,4,5-tetramethylimidazolium tetrafluoroborate to Pt(PPh(3))(4) or Pd(dcype)(dba) yields [PtI(tmiy)(PPh(3))(2)]BF(4) (9) and [PdI(tmiy)(dcype)]BF(4) (14), respectively (tmiy = 1,3,4,5-tetramethylimidazolin-2-ylidene, dcype = 1,3-bis(dicyclohexylphosphino)ethane)). X-ray crystal structures are reported for complexes 9 and 11 (cis and trans). These studies clearly show for the first time that oxidative addition of imidazolium and thiazolium cations is possible, and the results are discussed in terms of the ramifications for catalysis in imidazolium-based ionic liquids with both carbene-based and non-carbene-based complexes.     

Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry

A comparative analysis of protein identification for a total of 162 protein spots separated by two-dimensional gel electrophoresis from two fully sequenced archaea, Methanococcus jannaschii and Pyrococcus furiosus, using MALDI-TOF peptide mass mapping (PMM) and mu LC-MS/MS is presented. 100% of the gel spots analyzed were successfully matched to the predicted proteins in the two corresponding open reading frame databases by mu LC-MS/MS while 97% of them were identified by MALDI-TOF PMM. The high success rate from the PMM resulted from sample desalting/concentrating with ZipTip(C18) and optimization of several PMM search parameters including a 25 ppm average mass tolerance and the application of two different protein molecular weight search windows. By using this strategy, low-molecular weight (<23 kDa) proteins could be identified unambiguously with less than 5 peptide matches. Nine percent of spots were identified as containing multiple proteins. By using mu LC-MS/MS, 50% of the spots analyzed were identified as containing multiple proteins. mu LC-MS/MS demonstrated better protein sequence coverage than MALDI-TOF PMM over the entire mass range of proteins identified. MALDI-TOF and PMM produced unique peptide molecular weight matches that were not identified by mu LC-MS/MS. By incorporating amino acid sequence modifications into database searches, combined sequence coverage obtained from these two complimentary ionization methods exceeded 50% for approximately 70% of the 162 spots analyzed. This improved sequence coverage in combination with enzymatic digestions of different specificity is proposed as a method for analysis of post-translational modification from 2D-gel separated proteins.