Transfer, amplification, and inversion of helical chirality mediated by concerted interactions of C3-supramolecular dendrimers

The synthesis, structural, and retrostructural analysis of two libraries containing 16 first and second generation C(3)-symmetric self-assembling dendrimers based on dendrons connected at their apex via trisesters and trisamides of 1,3,5-benzenetricarboxylic acid is reported. A combination of X-ray diffraction and CD/UV analysis methods demonstrated that their C(3)-symmetry modulates different degrees of packing on the periphery of supramolecular structures that are responsible for the formation of chiral helical supramolecular columns and spheres self-organizable in a diversity of three-dimensional (3D) columnar, tetragonal, and cubic lattices. Two of these periodic arrays, a 3D columnar hexagonal superlattice and a 3D columnar simple orthorhombic chiral lattice with P222(1) symmetry, are unprecedented for supramolecular dendrimers. A thermal-reversible inversion of chirality was discovered in helical supramolecular columns. This inversion is induced, on heating, by the change in symmetry from a 3D columnar simple orthorhombic chiral lattice to a 3D columnar hexagonal array and, on cooling, by the change in symmetry from a 2D hexagonal to a 2D centered rectangular lattice, both exhibiting intracolumnar order. A first-order transition from coupled columns with long helical pitch, to weakly or uncorrelated columns with short helical pitch that generates a molecular rotator, was also discovered. The torsion angles of the molecular rotator are proportional to the change in temperature, and this effect is amplified in the case of the C(3)-symmetric trisamide supramolecular dendrimers forming H-bonds along their column. The structural changes reported here can be used to design complex functions based on helical supramolecular dendrimers with different degree of packing on their periphery.     

Information-theoretic approaches to SVM feature selection for metagenome read classification

Analysis of DNA sequences isolated directly from the environment, known as metagenomics, produces a large quantity of genome fragments that need to be classified into specific taxa. Most composition-based classification methods use all features instead of a subset of features that may maximize classifier accuracy. We show that feature selection methods can boost performance of taxonomic classifiers. This work proposes three different filter-based feature selection methods that stem from information theory: (1) a technique that combines Kullback-Leibler, Mutual Information, and distance information, (2) a text mining technique, TF-IDF, and (3) minimum redundancy-maximum-relevance (mRMR). The feature selection methods are compared by how well they improve support vector machine classification of genomic reads. Overall, the 6mer mRMR method performs well, especially on the phyla-level. If the number of total features is very large, feature selection becomes difficult because a small subset of features that captures a majority of the data variance is less likely to exist. Therefore, we conclude that there is a trade-off between feature set size and feature selection method to optimize classification performance. For larger feature set sizes, TF-IDF works better for finer-resolutions while mRMR performs the best out of any method for N=6 for all taxonomic levels.     

Mild Pd-catalyzed N-arylation of methanesulfonamide and related nucleophiles: avoiding potentially genotoxic reagents and byproducts

A convenient, general, and high yielding Pd-catalyzed cross-coupling of methanesulfonamide with aryl bromides and chlorides is reported. The use of this method eliminates concern over genotoxic impurities that can arise when an aniline is reacted with methanesulfonyl chloride. The application of this method to the synthesis of dofetilide is also reported.     

Eine colorimetrische Methode zur Bestimmung von ?thylenchlorhydrin

Ohne Zusammenfassung     

CD43, a molecule defective in Wiskott-Aldrich syndrome, binds ICAM-1.

THE protein CD43 (also known as sialophorin, leukosialin, large sialoglycoprotein or gp115) is expressed on the surface of T lymphocytes, monocytes, neutrophils, platelets and some B lymphocytes. Expression of CD43 is deficient and/or defective in the X-chromosome-linked immunodeficiency disorder Wiscott-Aldrich syndrome, suggesting that CD43 might have a role in T-cell activation. We have shown that expression of human CD43 in an HLA-DR-specific murine T-cell hybridoma enhances the antigen-specific response to stimulation by the human lymphoblastoid cell line Daudi, and that Daudi cells bind specifically to purified immobilized CD43. These data indicate that the specific interaction of CD43 with a ligand on the surface of Daudi cells might contribute to T-cell activation. Here we report evidence that intercellular adhesion molecule-1 (ICAM-1, or CD54), is a ligand for CD43.     

Integrated cavity output spectroscopy measurements of NO levels in breath with a pulsed room-temperature QCL

A cavity-enhanced spectrometer is developed for detection of exhaled nitric oxide in human breath. A thermoelectrically cooled, pulsed, quantum cascade laser, coupled to a high-finesse cavity, is used for trace-gas measurements. The trace-gas analyzer operates at 5.2 microns and utilizes integrated cavity output spectroscopy. Effective optical path lengths of 1.5 km are achieved in a 50-cm-length cell with a sample volume of 60 mL. The instrument is also capable of simultaneously measuringCO2 concentration in exhaled breath. Measurements were performed on human breath samples as well as simulated breath samples. Here we report a detection limit of ≤ 1 ppbv in 4 s for NO in human breath samples.     

Quantum mechanics of a miniuniverse

From the equations of general relativity for the radius of a closed homogeneous isotropic universe a Schrödinger equation for a particle is obtained. In the case of a universe filled with pressureless matter (dust) the equation is like that for thes states of a hydrogenlike atom. The miniuniverses obtained in this way have quantized masses of the order of the Planck mass.     

W-exchange dominance in neutral B-meson decay

Tests of W-exchange dominance in neutral B-meson decay are developed from the isospin and SU(3) properties of the final state. For B⁰ (d), it is shown that the decay rates into (D⁺ plus anything) and into (F⁺ plus anything) are always equal to one another and never more than $\text{3}\text{2}$ times the rate for (D⁰ plus anything). A similar analysis is applied to B⁰(s), and it is suggested that any of the four possibilities {;ψ, η_c}+(φ, η′) would make a good signal for this meson.     

First-order diffusive effects in nonlinear rate processes

It is shown that first-order diffusive effects can be incorporated immediately into the general initial-value problem solution to a system of nonlinear rate equations.