The use of electron impact dissociation and the photon-photon cascade technique to measure the lifetime of the B2Σ+ state of CN

The lifetime of the (B³Σ⁺_{υ= 0, 1} state of the CN radical has been measured by the photon-photon delayed coincidence technique, the CN radical being produced by electron impact dissociation of acetonitrile. This is the first lifetime measurement in a free radical by this method. The optical cascade in the band spectrum of CN used for the present measurement is H²Π_r - B²Σ⁺ - X²Σ⁺. The lifetime of the (B²Σ⁺)_{υ=0, 1} state in CN has been found to be 61.1 ± 7.6 ns.     

Orderly algorithms for generating restricted classes of graphs

Orderly algorithms for the generation of exhaustive lists of nonisomorphic graphs are discussed. The existence of orderly methods to generate the graphs with a given subgraph and without a given subgraph is established. This method can be used to list all the nonisomorphic subgraphs of a given graph, as well as to produce catalogs of Hamiltonian graphs, pancyclic graphs, degree-constrained graphs, and other classes. A generalization of this method is given that can be used to generate lists of graphs with given girth, planar graphs, k-colorable graphs, and k-connected graphs, for example. Finally, these observations are employed to generate restricted classes of digraphs, notably acyclic digraphs and poset digraphs. The generation of poset digraphs is shown to supply a practical orderly method for producing a catalog of lattices. Similar observations concerning vertex addition generation methods allow one to improve on existing methods for the generation of catalog of interval and circle graphs.     

Estimation of dynamical invariants without embedding by recurrence plots

In this paper we show that two dynamical invariants, the second order Renyi entropy and the correlation dimension, can be estimated from recurrence plots (RPs) with arbitrary embedding dimension and delay. This fact is interesting as these quantities are even invariant if no embedding is used. This is an important advantage of RPs compared to other techniques of nonlinear data analysis. These estimates for the correlation dimension and entropy are robust and, moreover, can be obtained at a low numerical cost. We exemplify our results for the Rossler system, the funnel attractor and the Mackey-Glass system. In the last part of the paper we estimate dynamical invariants for data from some fluid dynamical experiments and confirm previous evidence for low dimensional chaos in this experimental system.     

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

Bacillus anthracis is an endospore-forming bacterium that causes inhalational anthrax. Key virulence genes are found on plasmids (extra-chromosomal, circular, double-stranded DNA molecules) pXO1 (ref. 2) and pXO2 (ref. 3). To identify additional genes that might contribute to virulence, we analysed the complete sequence of the chromosome of B. anthracis Ames (about 5.23 megabases). We found several chromosomally encoded proteins that may contribute to pathogenicity--including haemolysins, phospholipases and iron acquisition functions--and identified numerous surface proteins that might be important targets for vaccines and drugs. Almost all these putative chromosomal virulence and surface proteins have homologues in Bacillus cereus, highlighting the similarity of B. anthracis to near-neighbours that are not associated with anthrax. By performing a comparative genome hybridization of 19 B. cereus and Bacillus thuringiensis strains against a B. anthracis DNA microarray, we confirmed the general similarity of chromosomal genes among this group of close relatives. However, we found that the gene sequences of pXO1 and pXO2 were more variable between strains, suggesting plasmid mobility in the group. The complete sequence of B. anthracis is a step towards a better understanding of anthrax pathogenesis.     

The genome sequence of the filamentous fungus Neurospora crassa

Neurospora crassa is a central organism in the history of twentieth-century genetics, biochemistry and molecular biology. Here, we report a high-quality draft sequence of the N. crassa genome. The approximately 40-megabase genome encodes about 10,000 protein-coding genes--more than twice as many as in the fission yeast Schizosaccharomyces pombe and only about 25% fewer than in the fruitfly Drosophila melanogaster. Analysis of the gene set yields insights into unexpected aspects of Neurospora biology including the identification of genes potentially associated with red light photobiology, genes implicated in secondary metabolism, and important differences in Ca2+ signalling as compared with plants and animals. Neurospora possesses the widest array of genome defence mechanisms known for any eukaryotic organism, including a process unique to fungi called repeat-induced point mutation (RIP). Genome analysis suggests that RIP has had a profound impact on genome evolution, greatly slowing the creation of new genes through genomic duplication and resulting in a genome with an unusually low proportion of closely related genes.     

Visual sensing of saccharides promoted by resorcinol condensation products

[structure: see text] Heating aqueous DMSO solutions of five saccharides in the presence of 1-3 reveals that each receptor promotes solution colors characteristic for each sugar. New compound 3 allows the direct correlation of sugar concentration with visible region absorbance and/or fluorescence intensities.     

Agent-based and multi-agent simulations: coming of age or in search of an identity?

The promise of agent-based for explicating properties of social systems has not yet been fully realized. Agent models sometimes provide only a veneer of, rather than substantive engagement with, social behavior. The problem will be illustrated with Axelrod’s model for evolution of ethnocentrism (a biological model) versus Schelling’s model for spatial segregation based on preferences (a cultural model). The examples show the need to incorporate both the biological and cultural basis for behavior through a schema that includes behavior based on cultural/cognitive processing of information and behavior based on biological/cognitive processing of information. An example of an agent-based model that implements decision making in this manner is discussed. The model accounts for heterogeneity in behavior outcomes and leads to two main predictions: (1) small scale, hunter-gatherer societies in resource scarce environments will have stable adaptations less affected by variation in resource abundance in comparison to groups in resource rich regions where inter-group conflict is more likely and (2) the relationship between community size, population size and administrative complexity will have two distinct patterns, one for patrilineally organized societies and the other for matrilineally organized societies. Both predictions have been verified empirically.