Stabilization of very rare tautomers of 1-methylcytosine by an excess electron

We characterized valence anionic states of 1-methylcytosine using various electronic structure methods. We found that the most stable valence anion is related to neither the canonical amino-oxo nor a rare imino-oxo tautomer, in which a proton is transferred from the N4 to N3 atom. Instead, it is related to an imino-oxo tautomer, in which the C5 atom is protonated. This anion is characterized by an electron vertical detachment energy (VDE) of 2.12 eV and it is more stable than the anion based on the canonical tautomer by 1.0 kcal/mol. The latter is characterized by a VDE of 0.31 eV. Another unusual low-lying imino-oxo tautomer with a VDE of 3.60 eV has the C6 atom protonated and is 3.6 kcal/mol less stable than the anion of the canonical tautomer. All these anionic states are adiabatically unbound with respect to the canonical amino-oxo neutral, with the instability of 5.8 kcal/mol for the most stable valence anion. The mechanism of formation of anionic tautomers with carbon atoms protonated may involve intermolecular proton transfer or dissociative electron attachment to the canonical neutral tautomer followed by a barrier-free attachment of a hydrogen atom to the C5 or C6 atom. The six-member ring structure of anionic tautomers with carbon atoms protonated is unstable upon an excess electron detachment. Indeed the neutral systems collapse without a barrier to a linear or a bicyclo structure, which might be viewed as lesions to DNA or RNA. Within the PCM hydration model, the anions become adiabatically bound with respect to the corresponding neutrals, and the two most stable tautomers have a carbon atom protonated.     

DBU-assisted 1,3,2-oxathiaphospholane ring-opening condensation with selected O-, S-, N- and C-nucleophiles

The reactivity of protected thymidine 3′-O- and 5′-O-(2-thio-1,3,2-oxathiaphospholanes) towards various nucleophiles in the presence of DBU is presented and mechanistic implications are discussed.     

Barrier-free intermolecular proton transfer induced by excess electron attachment to the complex of alanine with uracil

The photoelectron spectrum of the uracil-alanine anionic complex (UA)(-) has been recorded with 2.540 eV photons. This spectrum reveals a broad feature with a maximum between 1.6 and 2.1 eV. The vertical electron detachment energy is too large to be attributed to an (UA)(-) anionic complex in which an intact uracil anion is solvated by alanine, or vice versa. The neutral and anionic complexes of uracil and alanine were studied at the B3LYP and second-order M?ller-Plesset level of theory with 6-31++G(*) (*) basis sets. The neutral complexes form cyclic hydrogen bonds and the three most stable neutral complexes are bound by 0.72, 0.61, and 0.57 eV. The electron hole in complexes of uracil with alanine is localized on uracil, but the formation of a complex with alanine strongly modulates the vertical ionization energy of uracil. The theoretical results indicate that the excess electron in (UA)(-) occupies a pi(*) orbital localized on uracil. The excess electron attachment to the complex can induce a barrier-free proton transfer (BFPT) from the carboxylic group of alanine to the O8 atom of uracil. As a result, the four most stable structures of the uracil-alanine anionic complex can be characterized as a neutral radical of hydrogenated uracil solvated by a deprotonated alanine. Our current results for the anionic complex of uracil with alanine are similar to our previous results for the anion of uracil with glycine, and together they indicate that the BFPT process is not very sensitive to the nature of the amino acid's hydrophobic residual group. The BFPT to the O8 atom of uracil may be relevant to the damage suffered by nucleic acid bases due to exposure to low energy electrons.     

Kinetics and mechanism of base hydrolysis of Reinecke's salt revisited – specific salt effects

The kinetics of base hydrolysis of the trans-[Cr(NH₃)₂(NCS)₄]^– anion follows the rate law: -d[complex]/dt = k ₀ + k ₁[OH^–] (50–70 °C, [OH^–] = 0.1–1.9 M and = 2.0 M). The specific salt effect has been investigated for eight aqueous media: NaCl, NaBr, NaI, NaClO₄, KCl, KBr, CsCl and CsBr. The alkali-independent path (k ₀) does not show any specific effect of inert electrolyte ions, the activation parameters: H = 113.5 ± 0.4 kJ mol^–1 and S = 24.1 ± 1.3 J mol^–1 K^–1 are interpreted in the frame of a dissociative interchange mechanism (I _d). For the alkali-dependent path (k ₁) the specific salt effect is observed for cations of the inert electrolyte, showing an important role for ion-pair formation between the cations and reagent complex anion in the activation process. A linear correlation between lnk ₁ and lnK ₀ (K ₀ – ion-pair formation constant) has been found for the cations studied. The dissociative, via conjugate base, mechanism (D _CB) has been proposed for the alkali-dependent path.     

Unusual peak defocusing in capillary GC on hexakis(2,6-diO-pentyl-3-O-acetyl)-α-cyclodextrin stationary phase

An unusual peak defocusing effect influencing chromatographic performance over a limited range of elution temperatures is described for hexakis(2,6-di-O-pentyl-3-O-acetyl)-α-cyclodextrin stationary phase. Since this phenomenon is likely to be dependent on minor details of the cyclodextrin molecule, full assignment of the ¹H- and ¹³C-NMR-spectra are given.     

Fluorine-Stabilized Sulfur–Carbon Multiple Bonds

Alkylidene and alkylidyne sulfur fluorides contain sulfur–carbon multiple bonds. In contrast to the sulfur ylides, alkylidene sulfur fluorides fulfill all the criteria for double bonds, i.e. they have short bond lengths, strong anisotropic distribution of electron density, and rotation about the C? S bond is restricted. Alkylidyne sulfur fluorides have especially short bond distances and, due to a high amplitude bending motion, appear to be more or less linear, depending on the physical state. The advantage of the C? S multiple bond systems in contrast with numerous others, e.g. those of phosphorus and silicon, is that they exist without steric stabilization. Moreover, the limits of the triple-bond principle are outlined: the prognosis for triple bonds between two elements of higher periods is poor, because carbene-like or fully bridged structures win in terms of stability.     

Partially concurrent eluent evaporation with an early vapor exit; detection of food irradiation through coupled LC-GC analysis of the fat

This paper reports two subjects. It describes LC-GC transfer by partially concurrent eluent evaporation at a greatly accelerated rate, as required for optimal compatibility with 2–3 mm i.d. LC columns and LC flow rates up to some 500 μl/min. Evaporation rates around 200 μl/min were obtained using a 0.53 mm. i.d. uncoated pre-column and an early vapor exit. A stationary-phasecoated “retaining” pre-column was used for preventing escape of volatile solutes through the vapor exit. The technique was used for the detection of food irradiation by analyzing selected radiolysis products of triglycerides, namely alkanes/alkanes and aldehydes. Extracted fat of chicken, hazel-nuts, and soup mixes was injected in LO and the relevant fractions were transferred on-line to GC. For chicken and nuts, detection of irradiation was possible down to doses below 0.5 kGy. Detection limits were higher for soup mixes due to interfering peaks.     

CHEMILUMINESCENCE IN THE PEROXIDATION OF TANNIC ACID

Abstract— Peroxidation of tannins with alkaline H₂O₂ is accompanied by weak chemiluminescence in the spectral region 480–800 nm. o-Di and tri-hydroxy groups of polyphenols undergo oxidation by a free-radical mechanism and a green intermediate anion-radical with absorption Δ_max= 600 nm is formed. The radical mechanism is supported by the low activation energy 14–20 kJ/mol and the quenching effect of radical scavengers. The reaction of the green intermediate with peroxy anions is the chemiluminescence rate limiting step. In the presence of a-hydroxy-methylperoxide formed from H₂O₂ and formaldehyde, the alkaline peroxidation of tannins is accompanied by strong red luminescence (420–800 nm). The base catalyzed decomposition of peroxides gives only a weak red emission (460–800 nm). Light intensity is enhanced in D₂O by a factor 6.5. Quenchers of O₂(¹Δ_g) and 1,3-di-phenylisobenzofurane diminish light intensity in non-aqueous solutions. The data suggest ¹O₂ participation in the observed chemiluminescence. Thermo-chemical calculations give —ΔH values from 250–1000 kJ/mol for one elementary reaction step which limits the mechanism of chemi-enereization. Chemiexcitation of tannins is relevant to biochemical mechanisms of aerobic degradation of aromatic compounds, energy utilization as well as to defense and resistance processes in plants.     

Conjugated schiff's bases.20 cycloaddition of heterocomulenes to some 1,3-heterodienes involving unusual assistance of methyl group

Highly substituted 1,Δ-diazabutadienes react with aroyl isothiocyanates in a 1,3-dipolar cycloaddition node yielding five-membered thiohydantoin-type heterocycles. The cycloaddition is accompanied by 1,4 shift of hydrogen from a methyl group attached to C2 of the 1,C-diazabutadiene moiety. The mechanism of this reaction is discussed in comparison with similar cycloadditions with aryl isocyanates.     

Kinetics and mechanism of one dipicolinato ligand substitution in the chromium(III)–bis(dipicolinato) complex: an unusual rate dependence on acid concentration

The Na[Cr(PDA)₂] · 2H₂O complex (PDA¹ = dipicolinic acid anion) and its aquation product, [Cr(PDA)(H₂O)₃]⁺, were prepared and characterized. The electronic spectra demonstrate that the bis(dipicolinato) complex undergoes very fast partial dechelation during dissolution. In acidic media, pH controlled, rapid protolytic and ring opening processes lead to coexistence of complexes with one tridentate (PDA) and the other bi- or mono-dentate (PDA). The kinetics of PDA ligand liberation were followed spectrophotometrically within the 0.1–2.0 M HClO₄ range at I = 2.0 M. The observed first-order rate constant depends on [H⁺] according to the equation: k _obs = A[H⁺]/(1 + B[H⁺] + C[H⁺]²). A reaction course via the uncharged [Cr(PDA)(HPDA)(H₂O)₂]⁰ complex is proposed. The observed rate increase, followed by rate retardation with [H⁺] increase, is attributed to the unreactive [Cr(PDA)(H₂PDA)(H₂O)₂]⁺ complex. In terms of the proposed mechanism, A, B, C parameters have been defined as: A = k ₁ Q ₁, B = Q ₁, C = Q ₁ Q ₂ where k ₁ is the rate constant of the Cr^III-carboxylato oxygen bond-breaking in the monodentate HPDA ligand, Q ₁ is a composite value describing protolytic and dechelation processes and Q ₂ is the protonation constant of the uncharged [Cr(PDA)(HPDA)(H₂O)₂]⁰ complex.