Low-temperature nucleation in a kinetic Ising model with soft stochastic dynamics

We study low-temperature nucleation in kinetic Ising models by analytical and simulational methods, confirming the general result for the average metastable lifetime, =Aexp((betagamma) (beta=1/k(B)T) [Commun. Math. Phys. 137, 209 (1991)]]. Contrary to common belief, we find that both A and Gamma depend significantly on the stochastic dynamic. In particular, for a "soft" dynamic, in which the effects of the interactions and the applied field factorize in the transition rates, Gamma does not simply equal the energy barrier against nucleation, as it does for the standard Glauber dynamic, which does not have this factorization property.     

Femtosecond shaping of transverse and longitudinal light polarization

Femtosecond laser pulse shaping techniques have been restricted to propagating transverse electromagnetic waves. We present a scheme for pulse shaping of optical near fields based on the excitation of longitudinal electromagnetic fields with polarization-shaped light pulses. By solving Maxwell's equations for a model nanostructure, i.e., a scanning tunneling microscope tip, with help from the boundary-element method, we demonstrate that the electric field vector oscillates in a complex yet controllable fashion in three dimensions. Many applications are envisioned because literally another dimension in the optimal control of light-matter interaction is accessible.     

Problems Caused by High Concentration of ATP on Activation of the P2X7 Receptor in Bone Marrow Cells Loaded with the Ca2+ Fluorophore fura-2

Fura-2 is one of the most used fluorophore for measuring intracellular calcium concentration ([Ca2+]i). In mouse bone marrow cell suspensions ATP produces a biphasic effect: till 1 mM, ATP produces increases in [Ca2+]i; from 1 mM on an increase is observed, that is followed by the decrease in the 340/380 nm ratio (R340/380). At high ATP (4 mM) concentration fura-2 leaked from loaded bone marrow cell suspensions. We observed that ATP decreases fluorescence in the absorption and excitation spectra of fura-2, consequently the emitted one is decreased including the isobestic point (360 nm). ATP analogs: BzATP, ATPyS and UTP, but not alphabetaATP, ADP or AMP, promote decrease of fluorescence in the isobestic point of fura-2. The physical/chemical process that reduces the absorption and excitation of fura-2 by ATP is unknown. The P2X7 inhibitors, Mg2+ (5 mM), OxATP (300 microM) and Brilliant Blue (100 nM), blocked the efflux of fura-2 and ATP-induced R340/380 decrease. The J774 cell line and mononuclear cells with a higher expression of P2X7 receptors show the same decrease in R340/380 as that induced by ATP. In the HL-60 cell line, myeloid cells and erythroblasts extracted from bone marrow, such effect does not occur. It is concluded that the use of the fluorescent Ca2+ indicator fura-2 does not allow the correct measurement of [Ca2+]i in these cells in the presence of a higher concentration of ATP which activated the P2X7 receptor.     

Interpretation of heart rate variability via detrended fluctuation analysis and alphabeta filter

Detrended fluctuation analysis (DFA), suitable for the analysis of nonstationary time series, has confirmed the existence of persistent long-range correlations in healthy heart rate variability data. In this paper, we present the incorporation of the alphabeta filter to DFA to determine patterns in the power-law behavior that can be found in these correlations. Well-known simulated scenarios and real data involving normal and pathological circumstances were used to evaluate this process. The results presented here suggest the existence of evolving patterns, not always following a uniform power-law behavior, that cannot be described by scaling exponents estimated using a linear procedure over two predefined ranges. Instead, the power law is observed to have a continuous variation with segment length. We also show that the study of these patterns, avoiding initial assumptions about the nature of the data, may confer advantages to DFA by revealing more clearly abnormal physiological conditions detected in congestive heart failure patients related to the existence of dominant characteristic scales.     

Immobilizing a single pybox ligand onto a library of solid supports

Chiral pyridinebis(oxazoline) (pybox) ligands can be efficiently immobilized onto silica through position 4 of the pyridine ring. The crucial intermediate in this strategy is 4-chloropybox, which is prepared in good yield from chelidamic acid. 4-Chloropybox reacts with p-hydroxybenzaldehyde and p-aminophenol to give two intermediates (pybox-CHO and pybox-NH2) that allow to introduce the formyl and amino groups able to link to spacers with triethoxysilyl groups. The modified ligands and their ruthenium complexes are immobilized by grafting onto preformed silicas or, alternatively, the support is created by sol-gel synthesis using the functionalized chiral ligand as a silica monomer. In this way it is possible to create a library where the variation involves the support rather than the catalyst. The aim of this approach is to study the influence of different parameters, such as the textural properties of the support and the immobilization method, on the functionalization and catalytic performance. Some of the immobilized complexes are compared as heterogeneous catalysts in the cyclopropanation reaction of styrene with ethyl diazoacetate.     

New magnetic copper(II) coordination polymers with the polynitrile ligand (C[C(CN)2]3)2- and N-donor co-ligands

Reactions between CuCl2 and K2tcpd (tcpd2- = [C10N6]2- = (C[C(CN)2]3)2-) in the presence of neutral co-ligands (bpym = 2,2'-bipyrimidine, and tn = 1,3-diaminopropane) in aqueous solution yield the new compounds [Cu2(bpym)(tcpd)2(H2O)4] x 2H2O (1), [Cu(tn)(tcpd)] (2), and [Cu(tn)2(tcpd)] x H2O (3), which are characterized by X-ray crystallography and magnetic measurements. Compound 1 displays a one-dimensional structure in which the bpym ligand, acting with a bis-chelating coordination mode, leads to [Cu2(bpym)]4+ dinuclear units which are connected by two mu2-tcpd2- bridging ligands. Compound 2 consists of a three-dimensional structure generated by [Cu(tn)]2+ units connected by a mu4-tcpd2- ligand. The structure of 3 is made up of centrosymmetric planar [Cu(tn)]2+ units connected by a mu2-tcpd2- ligand leading to infinite zigzag chains. In compounds 1 and 3, the bridging coordination mode of the tcpd2- unit involves only two nitrogen atoms of one C(CN)2 wing, while in 2, this ligand acts via four nitrogen atoms of two C(CN)2 wings. Despite this difference, the structural features of the tcpd2- units in 1-3 are essentially similar. Magnetic measurements for compound 1 exhibit a maximum in the chi(m) vs T plot (at approximately 150 K) which is characteristic of strong antiferromagnetic exchange interactions between the Cu(II) metal ions dominated by the magnetic exchange through the bis-chelating bpym. The fit of the magnetic data to a dimer model gives J and g values of -90.0 cm(-1) and 2.12, respectively. For compounds 2 and 3 the thermal variations of the magnetic susceptibility show weak antiferromagnetic interactions between the Cu(II) metal ions that can be well reproduced with an antiferromagnetic regular S = 1/2 chain model that gives J values of -0.07(2) and -0.18(1) cm(-1) with g values of 2.12(1) and 2.13(1) for compounds 2 and 3, respectively (the Hamiltonian is written in all the cases as H = -2JS(a)S(b)).     

The earliest dromaeosaurid theropod from South America

The evolutionary history of Maniraptora, the clade of carnivorous dinosaurs that includes birds and the sickle-clawed Dromaeosauridae, has hitherto been largely restricted to Late Jurassic and Cretaceous deposits on northern continents. The stunning Early Cretaceous diversity of maniraptorans from Liaoning, China, coupled with a longevity implied by derived Late Jurassic forms such as Archaeopteryx, pushes the origins of maniraptoran lineages back to Pangaean times and engenders the possibility that such lineages existed in Gondwana. A few intriguing, but incomplete, maniraptoran specimens have been reported from South America, Africa and Madagascar. Their affinities remain contested, however, and they have been interpreted as biogeographic anomalies relative to other faunal components of these land-masses. Here we describe a near-complete, small dromaeosaurid that is both the most complete and the earliest member of the Maniraptora from South America, and which provides new evidence for a unique Gondwanan lineage of Dromaeosauridae with an origin predating the separation between northern and southern landmasses.     

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Aspergillus fumigatus is exceptional among microorganisms in being both a primary and opportunistic pathogen as well as a major allergen. Its conidia production is prolific, and so human respiratory tract exposure is almost constant. A. fumigatus is isolated from human habitats and vegetable compost heaps. In immunocompromised individuals, the incidence of invasive infection can be as high as 50% and the mortality rate is often about 50% (ref. 2). The interaction of A. fumigatus and other airborne fungi with the immune system is increasingly linked to severe asthma and sinusitis. Although the burden of invasive disease caused by A. fumigatus is substantial, the basic biology of the organism is mostly obscure. Here we show the complete 29.4-megabase genome sequence of the clinical isolate Af293, which consists of eight chromosomes containing 9,926 predicted genes. Microarray analysis revealed temperature-dependent expression of distinct sets of genes, as well as 700 A. fumigatus genes not present or significantly diverged in the closely related sexual species Neosartorya fischeri, many of which may have roles in the pathogenicity phenotype. The Af293 genome sequence provides an unparalleled resource for the future understanding of this remarkable fungus.