Use of the tubulin bound paclitaxel conformation for structure-based rational drug design

A new computational docking protocol has been developed and used in combination with conformational information inferred from REDOR-NMR experiments on microtubule bound 2-(p-fluorobenzoyl)paclitaxel to delineate a unique tubulin binding structure of paclitaxel. A conformationally constrained macrocyclic taxoid bearing a linker between the C-14 and C-3'N positions has been designed and synthesized to enforce this "REDOR-taxol" conformation. The novel taxoid SB-T-2053 inhibits the growth of MCF-7 and LCC-6 human breast cancer cells (wild-type and drug resistant) on the same order of magnitude as paclitaxel. Moreover, SB-T-2053 induces in vitro tubulin polymerization at least as well as paclitaxel, which directly validates our drug design process. These results open a new avenue for drug design of next generation taxoids and other microtubule-stabilizing agents based on the refined structural information of drug-tubulin complexes, in accordance with typical enzyme-inhibitor medicinal chemistry precepts.     

Effect of chemical potential on the computer simulation of hydrogen storage in single walled carbon nanotubes

Hydrogen is a kind of clean, sustainable and renewable energy carrier. Of the problems to be solved for the utilization of hydrogen energy, how to store and transport hydrogen has been given high priority on the research agenda. Recently, carbon nanotubes (CNTs) were reported to be very promising candidates for hydrogen uptake[1], which may have possibility to satisfy the benchmark set by the US Department of Energy (DOE) Hydrogen Plan for fuel cell powered vehicles: a gravimetric density …     

A new sensitive and selective fluorescence method for determination of chlorine dioxide in water using rhodamine S

A new simple, selective and sensitive method for the determination of trace chlorine dioxide in water has been developed, based on the oxidation by chlorine dioxide to reduction the fluorescence of rhodamine dyes in ammonia-ammonium chloride buffer solution. Four rhodamine dyes systems such as rhodamine S, rhodamine G, rhodamine B and butyl-rhodamine B were tested. The rhodamine S system is the best, with a linear range of 0.0060-0.450 μg mL⁻¹ and a detection limit of 0.0030 μg mL⁻¹ ClO₂. It was applied to the determination of chlorine dioxide in synthetic samples and real samples, with satisfactory results. This method has good selectivity, especially, other chlorine species such as chlorine, hypochlorite, chlorite and chlorate do not interfere the determination. The mechanism of fluorescence reduction was also considered.     

Crystallization and melting behaviors of polystyrene-b-poly(ethylene-co-butene) block copolymers

Non-isothermal and isothermal crystallization behaviors of polystyrene-b-poly(ethylene-co-butene) (PSt-b-PEB) block copolymers with different compositions and chain lengths were investigated by differential scanning calorimetry (DSC). The results show that crystallization of PEB block is strongly dependent on the composition. Crystallization temperature (T_c), melting temperature (T_m) and fusion enthalpy (ΔH_f) increase rapidly with PEB volume fraction (V_E) for block copolymers with V_E below 50%, but there is little change when PEB block becomes the major component. Glass transition temperature (T_g) of the PSt block and order-disorder transition temperature (T_ODT) of block copolymers also have a weak effect. The isothermal crystallization kinetics results show that Avrami exponent (n) was strongly dependent on the composition and crystallization temperature. For the block copolymers with V_E below 38.7 vol%, the values of n vary between 0.9 and 1.3, indicating that crystallization is confined. For the PSt-b-PEB block copolymers with V_E higher than 50%, fractionated crystallization behavior is usually observed. A two-step isothermal crystallization procedure is applied to these block copolymers. It is found that breakout crystallization occurs at higher T_c, but confined at lower T_c. Two overlapped melting peaks are observed for the block copolymers with fractionated crystallization behavior after two-step crystallization, and only the higher melting peak corresponding to breakout crystallization can be used to derive equilibrium melting temperature.     

Itosides A – I,New Phenolic Glycosides from Itoa orientalis

Eight new benzoylated gentisyl alcohol (=2‐(hydroxymethyl)benzene‐1,4‐diol) glucosides, itosides A–H ( 1 – 8 ), together with the new pyrocatechol (=benzene‐1,2‐diol) glycoside itoside I ( 9 ) were isolated from the bark and twigs of Itoa orientalis (Flacourtiaceae). In itosides B–D ( 2 – 4 ), the gentisyl alcohol moiety was esterified by 1‐hydroxy‐6‐oxocyclohex‐2‐ene‐1‐carboxylic acid, while itosides E–H ( 5 – 8 ) contained instead an additional 2‐hydroxybenzoic acid moiety. The compounds were accompanied by the known derivatives 4‐hydroxytremulacin ( 10 ), poliothyrsoside ( 11 ), poliothyrsin ( 12 ), homaloside D ( 13 ), tremulacin, and pyrocatechol β‐D ‐glucopyranoside. The structures of the new compounds were elucidated by spectral and chemical methods.     

微波衍生-离子对高效液相-磺化四苯基卟啉光度法同时测定痕量镍、铜、锰和锌

 用磺化四苯基卟啉 (TPPS4 )作柱前衍生试剂 ,在微波作用下进行衍生反应 ,研究了衍生和分离Ni2 + ,Mn2 + ,Zn2 + 和Cu2 + 的最佳条件。在 75 0W的微波作用下衍生反应 3min ,在C18柱上采用乙腈 水 (体积比为 2 2 5∶77 5 )体系作流动相 ,四乙基溴化铵 (TEABr)作离子对试剂 ,在 415nm处检测 ,建立了微波衍生 离子对高效液相快速分离、光度检测Ni2 + ,Mn2 + ,Zn2 + 和Cu2 + 的新方法。络合物和反应试剂在 15min内出峰完毕。Zn2 + ,Cu2 + ,Ni2 + 和Mn2 + 的检测限分别为 0 0 5 μg/L ,0 0 1μg/L ,0 10 μg/L和 0 40 μg/L。     

Cationic cyanine as a near-infrared fluorescent probe for the determination of nucleic acids

A new method with a cationic near-IR cyanine as fluorescent probe was developed for the determination of nucleic acids. The near-IR cyanine shows maximum excitation and emission wavelengths at 765 and 790 nm, respectively, in aqueous solution. The method is based on the fluorescence decrease of near-IR cyanine in the presence of nucleic acids. Under optimal conditions, the ratio of fluorescence intensity in the absence and presence of nucleic acids was proportional to the concentration of nucleic acids over the range 0.10-1.2 microg/mL for CT (calf thymus) DNA or SM (salmon sperm) DNA, and 0.10-1.6 microg/mL for yeast RNA. The detection limits were 30 ng/mL for CT DNA, 25 ng/mL for SM DNA and 70 ng/mL for yeast RNA. The relative standard deviation (n = 6) was 2.1% for 500 ng/mL CT DNA, 2.4% for 500 ng/mL SM DNA and 2.7% for 500 ng/mL yeast RNA, respectively.     

希土季铵盐配合物的研究——Ⅴ.[(n-C4H9)4N]3Nd(NCS)6的晶体结构研究

合成了硫氰酸合希土酸四丁基季铵盐配合物,测定了它们的远红外光谱及部分配合物的中红外光谱,结果表明,配合物中的NCS^-是以氮原子与Ln³⁺配位。用X射线单晶衍射法测定了[(n-C₄H₉)₄N]₃Nd(NCS)₆晶体的结构,结果表明,该晶体属单斜晶系,C_c空间群,晶胞参数为:a=25.188(8)Å,b=13.320(6)Å,c=25.322(8)Å,β=121.30(2)°,晶胞体积V=7258.9ų,每一晶胞中有四个配合物分子,中心离子Nd³⁺与六个来自NCS^-的氮原子配位,这六个氮位于配位正八面体的六个顶角上,构成配阴离子Nd(NCS)₆^3-,它与三个[(n-C₄H₉)₄N]⁺以静电引力结合成中心分子,所以晶体为离子型晶体。     

金属—血清白蛋白的结构研究——Ⅵ.等离子点附近HSA和BSA中Cu(Ⅱ)和Ni(Ⅱ)金属中心的结构

本文用紫外光谱研究了等离子点附近HSA或BSA ¹Cu(Ⅱ)或Ni(Ⅱ)金属中心的结构。结果表明:在pH₄.0～5.3时,Cu(Ⅱ)—HSA配合物在低浓度时独具五配位的四方锥构型,高浓度时(>10^-4mol·l^-1)为四配位的四方平面构型,Cu(Ⅱ)—BSA、Ni(Ⅱ)—BSA在上述pH范围内均只存在四方平面构型。Cu(Ⅱ)、Ni(Ⅱ)结合位置与生理pH下的相同,均在白蛋白的N端三肽段上,与Asp^{1相似文献}   

Voltammetric determination of uric acid by using gold nanotubule electrode

Gold nanotubule membranes were prepared by using electroless deposition of gold within the pores and surfaces of polycarbonate track-etched membranes.And the gold nanotubule membrane was used as an electrode for determination of uric acid in urine samples for the first time.In Britton-Robinson buffer of pH 4.56,uric acid exhibited well-defined differential pulse voltammograms.And the interference between coexistent ascorbic acid and uric acid was overcome owing to the attractive ability of the gold nanotubule electrode to yield a large anodic peak difference ca.0.404 V(vs.SCE).The proposed method was then applied to the determination of uric acid in urine without any pretreatment.