Characterization and de novo sequencing of Atlantic salmon vitellogenin protein by electrospray tandem and matrix-assisted laser desorption/ionization mass spectrometry

Vitellogenin (VTG) is a protein produced by the liver of oviparous animals in response to circulating estrogens. In the plasma of males and immature females, VTG is undetectable. VTG has been used as a biomarker for exposure to endocrine disruptors in many species. In the present study, characterization of intact Atlantic salmon VTG was effected using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI ToF MS). Tryptic digest peptides were analyzed by MALDI ToF MS to obtain a peptide mass fingerprint. De novo sequencing of the tryptic peptides used low-energy collisionally-induced dissociation (CID) in an electrospray ionization quadrupole-ToF orthogonal hybrid mass spectrometer (ESI Q-ToF MS/MS). The interpretation of the product-ion spectra obtained from the ESI Q-ToF MS/MS was done by Lutefisk, a computer-based software algorithm. The molecular mass of the intact protein was found to be 187335 Da. A total of 14 tryptic peptides were sequenced and compared with the complete rainbow trout VTG and the partial Atlantic salmon VTG sequences found in the Swiss-Prot database. De novo sequencing by CID MS/MS of 11 Atlantic salmon tryptic digest peptides with selected precursor ions at m/z 788.24, 700.20, 794.75, 834.31, 889.28, 819.79, 865.27, 843.81, 572.20, 573.66 and 561.68 showed high homology with the known sequence of rainbow trout VTG. The last two precursor peptide ions, found at m/z 573.66 and m/z 561.68, also specifically matched the known portion of the Atlantic salmon VTG sequence. Finally, three tryptic precursor peptide ions found at m/z 795.18, 893.28 and 791.05, provided product-ion spectra, which were exclusive to the unsequenced portion of the Atlantic salmon VTG.     

Dynamic mechanical analysis (DMA), 13c solid state nmr and micro-thermomechanical studies of historical parchment

DMA and solid state ¹³C NMR techniques were used to measure historical parchment samples within the framework of the project (MAP) Micro Analysis of Parchment (EC contract No. SMT4-96-2101) in collaboration with the School of Conservation in Copenhagen. DMA was used in both thermal scan and creep modes. Thermal scans provided information on the transitions associated with the collagen polymer. Microthermal analysis was also used to obtain information on the topography and thermal conductivity of sample areas of 100 μm. Localised heating enabled measurements of softening transitions in the sample. This behaviour is influenced by the chemical composition of parchment. 13C NMR provided information on the carbon atoms associated with the polypeptide chains of the collagen in parchment. The behaviour of samples immersed in water and measured in DMA creep mode was used to measure the shrinkage behaviour of the parchment samples. The different but complementary techniques provided a means for characterising the physicochemical state of parchment samples. This revised version was published online in July 2006 with corrections to the Cover Date.     

The explicit construction of irreducible polynomials over finite fields

For a finite field GF(q) of odd prime power order q, and n 1, we construct explicitly a sequence of monic irreducible reciprocal polynomials of degree n2 ^m (m = 1, 2, 3, ...) over GF(q). It is the analog for fields of odd order of constructions of Wiedemann and of Meyn over GF(2). We also deduce iterated presentations of GF (q ⁿ 2).     

Surface forces,supramolecular polymers,and inversion symmetry

The effects of supramolecular equilibrium polymers on surface forces are studied by both a phenomenological Landau type analysis and a molecular model based on a Bethe-Guggenheim approximation. We point out that surface forces brought about by equilibrium polymers may be completely different from what can be found with "ordinary" polymers. The new feature is the role of inversion (a)symmetry or "directionality" of the associating unit molecules ("monomers"). Symmetric B-B monomers (where B denotes a self-complementary binding group) give rise to nondirectional chains and lead to attractive forces between similar surfaces. Asymmetric A-D monomers (where A and D denote complementary acceptor and donor groups, respectively) produce directional chains and can cause strong repulsion. The range of the attractive force has a maximum at intermediate concentration, while the range of the repulsive force increases over the whole concentration range.