Nanomolar Inhibitors for Two Distinct Biological Target Families from a Single Synthetic Sequence: A Next Step in Combinatorial Library Design?

One common synthetic route creates small-molecule libraries directed toward two functionally distinct target families. The novel structural template 1 can independently display the necessary pharmacophore patterns for inhibition of members of two different biomolecular target families, the matrix metalloproteinases (MMPs) or the phosphodiesterases (PDEs). The incorporation of multiple target family directed design elements into combinatorial library design could help expedite the pharmaceutical lead discovery process. Z=OR′ (PDE4), H (MMPs).     

ChipCheck--a program predicting total hybridization equilibria for DNA binding to small oligonucleotide microarrays

Presented here is the program ChipCheck that allows the computation of total hybridization equilibria for hybridization experiments involving small oligonucleotide arrays. The calculation requires the free energies of binding for all pairs of probes and targets as well as total strand concentrations and probe molecule numbers. ChipCheck has been tested computationally on microarrays with up to 100 spots and 42 target strands (4200 binding equilibria). It arrives at solutions through iterations employing the multidimensional Newton method. While currently running in simulation mode only, an extension of the approach to the exhaustive analysis of chip results is being outlined and may be implemented in the future. The output displays the extent of correct and cross hybridization both graphically and numerically. In principle, calculating total hybridization equilibria allows for eliminating noise from DNA chip results and thus an improvement in sensitivity and accuracy.     

On-line determination of mercury in river water at the German monitoring station Schnackenburg/Elbe

A monitor is described which provides the on-line determination of mercury in river water at concentrations from 20 to 1000 ng/L. The measurement includes an on-line digestion with Br^–/BrO₃ ^– and UV-radiation. Each determination is controlled by an on-line addition of 50 and 100 ng/L mercury carried out by pre-dilution of a 500 and 1000 ng/L stock solution using sequential injection analysis (SIA). One cycle of analysis takes 20 min and results in nine signals. A five days stand-alone operation has been performed successfully. Details are also published at web page: “http/www.rzbd.fh-hamburg.de/¶～prmercol”     

The four-electron diamagnetic ring current of porphycene

Porphycene, an isomer that can replace porphin in chemical and biochemical contexts, is predicted by ab initio calculation to exhibit a global diatropic pi ring current with bifurcation across the four pyrrole units of the macrocycle. Analysis of the orbital contributions to the current density in porphycene reveals that the global current, with its bifurcation feature, is attributable to the four electrons of the near-degenerate HOMO levels, the same set of active electrons that feature in the well-known four-orbital model of the electronic spectra of porphyrins. Integration of the current density gives 1H, 13C and 15N NMR shieldings that are compatible with the observed low-field shifts of peripheral and bridge protons and high-field shift of the internal NH protons, assignment of the 13C NMR spectrum and the single average 15N chemical shift resulting from rapid NH tautomerism. Geometries were calculated with the DFT B3LYP functional, the current density maps were calculated with the ipsocentric coupled-Hartree-Fock CTOCD-DZ method, and the shieldings with the CTOCD-PZ2 variant, all in the same 6-31G** basis.     

Syntheses and Structures of Trilithium Cyclotriphosphazenates Equipped with 2‐Halo‐aryl Substituents

Hexakis (2‐halo‐anilino) cyclotriphosphazenes (2‐X‐C₆H₄NH)₆P₃N₃ {X = F ( 1d ), Cl ( 1e ), Br ( 1f )} were prepared by refluxing mixtures of hexachloro cyclotriphosphazene, 2‐haloaniline and triethylamine in toluene and characterized by single crystal X‐ray diffraction. 1d , 1e and 1f were reacted with ⁿBuLi in thf. Reactions were monitored with ³¹P NMR. Addition of three equivalents of ⁿBuLi yields lithium complexes of trianionic phosphazenates [{(thf)₂Li}₃{(2‐X‐C₆H₄N)₃(2‐X‐C₆H₄NH)₃P₃N₃}] {X= F ( 2d ), Cl ( 2e ) and Br ( 2f )}. 2d , 2e and 2f were structurally characterized by X‐ray diffraction, which reveals monomeric cis‐metalated phosphazenates featuring central P₃N₃ ring systems of chair conformation. Lithium ions reside in three N(eq)‐P‐N(endo) chelation sites at one face of the P₃N₃ ring system. Li…X distances are rather long (> 3Å) indicating no Li‐X interactions.     

Highly Functionalized Cyclopentane Derivatives by Tandem Michael Addition/Radical Cyclization/Oxygenation Reactions

Densely functionalized cyclopentane derivatives with up to four consecutive stereocenters are assembled by a tandem Michael addition/single‐electron transfer oxidation/radical cyclization/oxygenation strategy mediated by ferrocenium hexafluorophosphate, a recyclable, less toxic single‐electron transfer oxidant. Ester enolates were coupled with α‐benzylidene and α‐alkylidene β‐dicarbonyl compounds with switchable diastereoselectivity. This pivotal steering element subsequently controls the diastereoselectivity of the radical cyclization step. The substitution pattern of the radical cyclization acceptor enables a switch of the cyclization mode from a 5‐exo pattern for terminally substituted olefin units to a 6‐endo mode for internally substituted acceptors. The oxidative anionic/radical strategy also allows efficient termination by oxygenation with the free radical 2,2,6,6‐tetramethyl‐1‐piperidinoxyl, and two C?C bonds and one C?O bond are thus formed in the sequence. A stereochemical model is proposed that accounts for all of the experimental results and allows the prediction of the stereochemical outcome. Further transformations of the synthesized cyclopentanes are reported.     

Mono-Phosphazenyl Phosphines (R2N)3P=N–P(NR2)2 – Strong P-Bases,P-Donors,and P-Nucleophiles for the Construction of Chelates

We present a convenient three-step synthesis of amino substituted phosphazenyl phosphines of the general formula (R₂N)₃P=N–P(NR₂)₂ [NR₂ = N(CH₂)₄, N(CH₂)₅, N(CH₂)₆]. These easily accessible mixed valent compounds display a surprisingly high proton affinity and basicity in the same range as the corresponding Schwesinger diphosphazene (Me₂N)₃P=N–P=NEt(NMe₂)₂ (Et-P₂) and Verkade's proazaphosphatrane superbases. Within the central [P^III–N=P^V] scaffold, the phosphine P^III and not the phosphazene N^III atom is the center of highest proton affinity, basicity and donor strength. As P-bases, the title compounds display calculated proton affinities between 265.8 (NR₂ = NMe₂) and 274.7 kcal · mol^–1 [NR₂ = N(CH₂)₄] and pK_BH⁺ values between 26.4 (NR₂ = NMe₂) and 31.5 [NR₂ = N(CH₂)₄] on the acetonitrile scale. As P-nucleophiles, they are key intermediates in the synthesis of hyperbasic bis(diphosphazene) proton sponges, chiral bis(diphosphazene) proton pincers, bisphosphazides, and superbasic P₂-bisylides. Their Staudinger reactions as nucleophile towards 1,8-diazidonaphthalene leading to 1,8-naphthalene-bisphosphazides is described in detail. The donor strength of the title compounds towards fragments [Se] and [Ni(CO)₃] is in the same range as that of N-heterocyclic carbenes.