Synthesis and Circular Dichroism of Both Enantiomers of 2-deuterofluoroacetic acid ( Fluoro[2H1]acetic acid)

Sharpless epoxidation of (E)-1-(trimethylsilyl)[1-²H₁]oct-1-en-3-o1 ( 3a ) yielded (1S,2S,3S)- and (1R,2R,3R)-1-(trimethylsilyl)-1,2-epoxy[1-²H₁]octan-3-ols ( 4a and 4b , resp.) which were converted in three steps into (S)- and (R)-fluoro[ ²H₁]acetic acid ( 7a and 7b , resp.) in good yields. Their high isotopic and optical purity was established by ¹H- and ¹⁹F-NMR, mass, and circular-dichroism spectroscopy.     

Site-specific amide hydrogen/deuterium exchange in E. coli thioredoxins measured by electrospray ionization mass spectrometry

Mass spectrometry as an analytical tool to study protein folding and structure by hydrogen/deuterium exchange is a relatively new approach. In this study, site-specific amide deuterium content was measured in oxidized and reduced E. coli thioredoxins by using the b(n) ions in electrospray ionization CID MS/MS experiments after 20-s incubation in D(2)O phosphate-buffered solution (pH 5.7). The deuterium levels correlated well with reported NMR-determined H/D exchange rate constants. The deuterium measured by y(n) ions, however, showed much less reliable correlation with rate exchange data. In general, residues in alpha helices and beta sheets, when measured by b(n) ions, showed low incorporation of deuterium while loops and turns had high deuterium levels. Most amide sites in the two protein forms showed similar deuterium levels consistent with the expected similarity of their structures, but there were some differences. The turn consisting of residues 18-22 in particular showed more variability in deuterium content consistent with reported structural differences in the two forms. The deuterium uptake by thioredoxins alkylated at Cys-32 by S-(2-chloroethyl)glutathione and S-(2-chloroethyl)cysteine, in peptides 1-24 and 45-58, was similar to that observed for oxidized and reduced thioredoxins, but several residues, particularly Leu-53 and Thr-54, showed slightly elevated deuterium levels, suggesting that structural changes had occurred from alkylation of the protein at Cys-32. It is concluded that b(n) ions are reliable for determining the extent of site-specific amide hydrogen isotope exchange and that mass spectrometry is useful as a complementary technique to NMR and other analytical methods for probing regional structural characteristics of proteins.     

Facilitated transport from ternary cation mixtures through water—chloroform—water membrane systems containing macrocyclic ligands

Cation fluxes were determined for various three-component, equimolar mixtures of alkali metal, alkaline earth, and Pb²⁺ cations in a H₂O---CHCl₃---H₂O liquid membrane system incorporating macrocyclic polyethers as carriers. Carrier ligands studied were 18-crown-6, dicyclohexano-18-crown-6, 1,10-diaza-18-crown-6, 21-crown-7, dibenzo-24-crown-8, and cryptand [2.2.2]. Correlations were found between transport and relative cation:polyether cavity radii, the type of substituents present on the polyether ring, and the type and number of donor atoms present. All the ligands studied transported Pb²⁺ at higher rates than the other Mⁿ⁺ in the mixtures. Transport behavior in these multi-cation systems can be predicted from Mⁿ⁺—polyether complex stability constant data in most cases.     

Insertion Reactions of Carbon Disulfide into Mg‐C and Mg‐N Bonds: Syntheses and Structural Determinations of Mg(S2CY)2(THF)n(Y=NEt2, NiPr2, iPr,Ph) and BrMg(S2CZ)(THF)3(Z=Ph,iPr)

The insertion reaction of CS₂ with Mg(NR₂)₂ (R= Et, ⁱPr), MgR′₂ (R′= Et, Ph) and R″MgBr (R″= ⁱPr, Ph) respectively lead solid products, Mg(S₂CNR₂)₂(THF)_n ( 1 : R= Et, n=2; 2 : R= ⁱPr, n=1), Mg(S₂C′R)₂(THF)₂ ( 3 : ′R= Et, 4 : ′R= Ph), BrMg(S₂C″R) (THF)₃ ( 5 : ″R= ⁱPr, 6 : ″R= Ph) in which the inserted carbon disulfides act as terminal chelating ligands. These compounds were characterized with ¹H, ¹³C NMR, IR spectroscopy, mass spectrometry, elemental analyses, and X‐ray crystallography.     

Jump discontinuities of semilinear,strictly hyperbolic systems in two variables: Creation and propagation

The creation and propagation of jump discontinuities in the solutions of semilinear strictly hyperbolic systems is studied in the case where the initial data has a discrete set, {x _i } _i ⁼¹ⁿ , of jump discontinuities. LetS be the smallest closed set which satisfies:

1. S is a union of forward characteristics.
2. S contains all the forward characteristics from the points {x _i } _i ⁼¹ⁿ .
3. if two forward characteristics inS intersect, then all forward characteristics from the point of intersection lie inS.

We prove that the singular support of the solution lies inS. We derive a sum law which gives a lower bound on the smoothness of the solution across forward characteristics from an intersection point. We prove a sufficient condition which guarantees that in many cases the lower bound is also an upper bound.     

An application of coupled reference interaction site model/molecular dynamics to the conformational analysis of the alanine dipeptide

We present an application of our recently proposed coupled reference interaction site model (RISM) molecular dynamics (MD) solvation free energy methodology [Freedman and Truong, Chem. Phys. Lett. 381, 362 (2003); J. Chem. Phys. 121, 2187 (2004)] to study the conformational stability of alanine dipeptide in aqueous solution. In this methodology, radial distribution functions obtained from a single MD simulation are substituted into a RISM expression for solvation free energy. Consequently, iterative solution of the RISM equation is not needed. The relative solvation free energies of seven different conformations of the alanine dipeptide in aqueous solution are calculated. Results from the coupled RISM/MD methodology are in good agreement with those from earlier simulations using the accurate free energy perturbation approach, showing that the alphaR conformation is most stabilized by solution. This study establishes a framework for applying this coupled RISM/MD method to larger biological systems.     

Some Topological Properties of Solution Sets in a Second Order Differential Inclusion with m-point Boundary Conditions

We consider a class of m-point (m > 3) second order boundary value problem (P_F\cal{P}_{F}) in a separable Banach space E of the form W ^{2, 1}_E([0, 1])W ^{2, 1}_E([0, 1])-solutions of (P_F\cal{P}_{F}) is compact and is a retract in C¹_E([0, 1])C^1_E([0, 1]). A new existence result of W ^{2, 1}_E([0, 1])W ^{2, 1}_E([0, 1])-solutions and a related relaxation problem are also provided, here F is no longer bounded.     

Evaluation of interfacial toughness curve of bimaterial in submicron scale

A novel method combining the experimental data at only two different mixed mode fractures and an empirical interface toughness function has been proposed to establish the interfacial toughness function of a bimaterial in submicron scale. The modified four-point bend specimen was used in experiment to evaluate the first type of mixed mode fracture, while the sandwiched cantilever specimen was employed to get the second one. An empirical interface toughness function reflecting quite accurately the delamination behavior was adopted as a typical one. The obtained results investigated that the proposed method could be used to calibrate not only the interfacial fracture criteria at pure modes but also at any mixed mode fracture of bimaterials in submicron scale.     

Unexpected formation of dinaphthoaza-17-crown-5 ether containing γ-aminopiperidine subunit

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Cinchona based squaramide catalysed enantioselective Michael addition of α-nitrophosphonates to aryl acrylates: enantioselective synthesis of quaternary α-aminophosphonates

Several cinchona based squaramide catalysts were applied to the asymmetric Michael addition of α-nitroethylphosphonates to acrylic acid aryl esters, resulting in high yields and enantioselectivities. The absolute configuration of one of the quaternary α-nitrophosphonate adducts was deduced from its experimental and calculated CD spectra. The adducts were reduced to their cyclic aminophosphonates by catalytic hydrogenation.