Theoretical study of addition reactions of heavy carbenes to carbon and boron nitride nanotubes

In an effort to gain insight into the activation energies and reaction enthalpies of the chemical functionalization of carbon and boron nitride nanotubes, calculations using density functional theory have been carried out for the cycloaddition of a heavy carbene to a single-walled carbon (SWCNT; C(130)H(20)) and a boron nitride (SWBNNT; B(65)N(65)H(20)) nanotube. The (CH(3))(2)X + SWCNT and (CH(3))(2)X + SWBNNT (X = C, Si, Ge, Sn, and Pb) reactions are the subject of the present study. All the stationary points were determined at the B3LYP/LANL2DZ level of theory. The major conclusions that can be drawn from this work are as follows: (i) Considering both the activation barrier and reaction enthalpy based on the model calculations presented here, it is found that the order of (CH(3))(2)X reactivity is X = C > Si > Ge > Sn > Pb, irrespective of whether cycloaddition is to a SWCNT or a SWBNNT sidewall. That is to say, (CH(3))(2)C and (CH(3))(2)Si can readily add to the sidewalls of SWCNT and SWBNNT, whereas (CH(3))(2)Ge, (CH(3))(2)Sn, and (CH(3))(2)Pb are unreactive. (ii) Since the chemical reactivities of SWCNT and SWBNNT sidewalls closely resemble those of the small C(16)H(10) and B(8)N(8)H(10) molecules, at least in a qualitative sense, the use of the above small molecules as models is sufficient to provide qualitatively correct results. (iii) Our theoretical observations indicate that all the (5,5) SWCNT and SWBNNT cycloadducts favor opened rather than closed three-membered ring structures. (iv) The theoretical investigations demonstrate that the singlet-triplet splitting of the carbene species (R(2)X) as well as that of the small model molecules can be used as a diagnostic tool to predict the addition reactivities of carbene analogues and sidewalls of various nanotubes, respectively. Moreover, the results obtained in this work allow a number of predictions to be made.     

A novel and efficient ionic liquid supported synthesis of oligosaccharides

A novel and efficient ionic liquid supported synthesis of oligosaccharides with a general protocol of coupling and purification is described. The method represents an attractive alternative to the classical solid- and fluorous-phase synthesis strategies and combines the advantage of performing homogeneous chemistry on a relatively large scale while avoiding large excesses of reagents.     

The Tolman length: is it positive or negative?

By means of a large-scale molecular dynamics simulation, we show that the Tolman length, although positive, is much smaller in magnitude than previously reported. We found that the range of interparticle interaction can significantly affect the magnitude of the Tolman length. When the range of interaction is longer than five molecular diameters, the Tolman length is on the order of a few hundredths of the molecular diameter, rather than a few tenths known previously.     

The compensation effect revisited

It is generally accepted that the compensation effect arises when a linear relation between InA andE is detected for a simple reaction taking place over different catalysts or for different reactions over one catalyst. For a perfect linear relation between InA andE representation of the reaction rate constant in an Arrhenius plot results in a series of straight lines which intersect in a single point. The importance is stressed of defining unambiguously what is meant by the compensation effect, and it is shown how the scatter in the values of InA is translated into Arrhenius plots.     

Stereocontrolled synthesis of bicyclic lactone derivatives via tungsten-mediated [3 + 2] cycloaddition of epoxides with a tethered alkynyl group

In the presence of BF3*Et2O, alkynyltungsten complexes underwent [3 + 2] cycloaddition with tethered epoxides to give bicyclic -lactones efficiently. Only one diastereomeric product was formed despite the presence of three stereogenic centers. A mechanism is proposed that involves formation of a tungsten-vinylidenium species via an SN2 attack of the epoxide carbon by an alkynyltungsten group to give a tungsten-enol ether species via counterattack at the central tungsten-vinylidenium carbon by the OBF3- terminus. Most of the tungsten enol ether species were too unstable for isolation and underwent hydrolysis to give only cis-fused -bicyclic lactones. This cyclization works for both cis- and trans-epoxides and tolerates various functional groups. In the case of trans-phenyl epoxide, the reaction led to an addition product via a 6-endo attack of epoxide by the tungsten fragment. This method provides a simple enantiospecific synthesis of complex bicyclic lactones if a chiral epoxide is used in the cyclization. It is also applicable to the one-pot synthesis of bicyclic unsaturated gamma-lactones if a suitable alkynyltungsten functionality is used.     

Molecular dynamics simulations of the dinuclear zinc-beta-lactamase from Bacteroides fragilis complexed with imipenem

Herein, we present results from MD simulations of the Michaelis complex formed between the dizinc beta-lactamase from B. fragilis and imipenem. We considered two catalytically important configurations, which differ in the presence or absence of a hydroxide bridge connecting the two zinc ions in the active site. The structural and dynamical effects induced by substrate binding, the specific roles of the conserved residues and the zinc-bound water molecules, the near attack conformers of the Michaelis complex, and so forth, are discussed in detail. The relative stability of the two configurations was estimated from QM linear scaling calculations on the enzyme-substrate complex combined with Poisson-Boltzmann electrostatic calculations and normal mode calculations. Importantly, we find that the two configurations have similar energies, indicating that these two structures could readily be interchanged, thereby facilitating catalysis. The configuration with the hydroxide bound to the two zinc ions is predicted to be the resting form of the enzyme, while the configuration without the bridge is the reactive form that was found to place the hydroxide in position to attack the carbonyl of the beta-lactam ring. Thus, we propose that the enzyme initiates catalysis by converting from the hydroxide bridge form into the configuration that lacks the hydroxide bridge. This interconversion increases the nucleophilicity of the hydroxide ion and exposes it to the beta-lactam carbonyl, which ultimately facilitates nucleophilic attack. The implications of the observed modes of binding, the possible influence of mutating the Lys184 and Asn193 residues on substrate binding, and the reaction mechanism are also discussed in detail.     

Solvent-modulated chemoselective deprotections of trialkylsilyl esters and chemoselective esterifications

A series of trialkylsilyl esters were deprotected or transesterificated into their corresponding carboxylic acids or methyl esters under a catalytic amount of CBr₄ in alcohol reaction system. This method enables to desilylate secondary sp³-carbon, sp²-carbon, sp-carbon and aryl tethered trialkylsilyl esters to carboxylic acids, whereas primary sp³-carbon tethered trialkylsilyl esters were further converted into their methyl esters under CBr₄/MeOH reaction conditions. The highly chemoselective deprotections can be modulated and achieved by the introduced protecting trialkylsilyl groups and the used alcohols such as MeOH and EtOH under this photochemically-induced reaction conditions.     

Homolytic C-H and N-H bond dissociation energies of strained organic compounds

High-level computations at G3, CBS-Q, and G3B3 levels were conducted, and good-quality C-H and N-H bond dissociation energies (BDEs) were obtained for a variety of saturated and unsaturated strained hydrocarbons and amines for the first time. From detailed NBO analyses, we found that the C-H BDEs of hydrocarbons are determined mainly by the hybridization of the parent compound, the hybridization of the radical, and the extent of spin delocalization of the radical. The ring strain has a significant effect on the C-H BDE because it forces the parent compound and radical to adopt certain undesirable hybridization. A structure-activity relationship equation (i.e., BDE (C-H) = 61.1-227.8 (p(parent)% - 0.75)(2) + 152.9 (p(radical)% - 1.00)(2) + 40.4 spin) was established, and it can predict the C-H BDEs of a variety of saturated and unsaturated strained hydrocarbons fairly well. For the C-H BDEs associated with the bridgehead carbons of the highly rigid strained compounds, we found that the strength of the C-H bond can also be predicted from the H-C-C bond angles of the bridgehead carbon. Finally, we found that N-H BDEs show less dependence on the ring strain than C-H BDEs.