Adsorption of an endoglucanase from the hyperthermophilic Pyrococcus furiosus on hydrophobic (polystyrene) and hydrophilic (silica) surfaces increases protein heat stability

The interaction of an endoglucanase from the hyperthermophilic microorganism Pyrococcus furiosus with two types of surfaces, that is, hydrophobic polystyrene and hydrophilic silica, was investigated, and the adsorption isotherms were determined. The adsorbed hyperthermostable enzyme did not undergo loss of biological activity. A model was proposed for the mechanism of interaction of the enzyme with the surface based on the shape of the adsorption isotherm, the morphological characteristics of the enzyme, and the thermodynamic parameters of the system. The enzyme was irreversibly immobilized at the solid/liquid interface even at high temperatures, and most interestingly, it acquired further heat stabilization upon adsorption. The denaturation temperature increased from 108 degrees C in solution to 116 degrees C upon adsorption on hydrophilic silica particles. Adsorption on the hydrophobic polystyrene surface even shifted the denaturation temperature to 135 degrees C, the most extreme experimentally determined protein denaturation temperature ever reported. Maintenance of the biological function particularly at high temperatures is important for the development of solid substrate immobilized enzymes for applications in biocatalysis and biotechnology. This also presents an additional stabilization mechanism employed by nature where the extracellular hyperthermostable enzyme remains folded and active at the extreme temperatures of its natural environment by adsorption on the surface of rocks and other materials appearing in the surroundings of the microorganism.     

Interaction of Fe(III) with herbicide-carboxylato ligands – Di-, tri- and tetra-nuclear compounds: Structure and magnetic behavior

The iron complexes with the phenoxyalkanoic acids 3,4-D, 2,3-D and 2,4,5-T in the presence or not of a nitrogen donor heterocyclic ligand, phen, were prepared and characterized. Interaction of Fe(III) with phenoxyalkanoic acids and phen leads to dinuclear neutral complexes while the absence of phen favours trinuclear cationic or tetranuclear neutral forms. The crystal structure of hexakis(2,3-dichlorophenoxyacetato)tris(methanol)oxotri-iron(III) chloride–methanol(1/3), [Fe₃O(2,3-D)₆(MeOH)₃]Cl · 3MeOH (2), and tetrakis(dimethyl-sulfoxide)octakis(2,4,5-trichlorophenoxyacetato)dioxotetra-iron(III) methanol(1/2)–water(1/1)–dimethylsulfoxide(1/0.8), {[Fe₄O₂(2,4,5-T)₈(dmso)₄] · 2MeOH · H₂O · 0.8dmso} (3), have been determined and refined by least-squares methods using three-dimensional Mo Kα data.     

Structural dependence of the efficiency of functionalization of silica-coated FeOx magnetic nanoparticles studied by ATR-IR

The efficiency of propylamino functionalization of magnetic silica-coated FeO_x nanoparticles prepared by different methods, including coprecipitation and flame aerosol synthesis, has been evaluated by attenuated total reflection infrared spectroscopy (ATR-IR) combined with a specific surface reaction, thus revealing the availability of the grafted functional groups. Large differences in the population of reactive groups were observed for the investigated materials, underlining the tight relation between the structure of nanoparticles and their suitability for organic functionalization. The materials possessed different core structure, surface area, and porosity, as evidenced by transmission electron microscopy and nitrogen adsorption-desorption isotherms. Grafting of aminopropyl groups using a standard procedure based on reaction with (3-aminopropyl)trimethoxysilane as source of the propylamino groups was performed, followed by classical dry analysis methods to determine the specific concentration of the organic functional groups (in mmol g⁻¹ of material). ATR-IR spectroscopy in a specially constructed reactor cell was applied as wet methodology to determine the chemically available amount of such functional groups, showing that the materials possess largely different loading capacity, with a variability of up to 70% in the chemical availability of the organic functional group. The amount of (3-aminopropyl)trimethoxysilane used for functionalization was optimized, thus reaching a saturation limit characteristic of the material.     

High-pressure Fourier transform micro-Raman spectroscopic investigation of diiodine-heterocyclic thioamide adducts

The pressure dependences of the Fourier transform micro-Raman spectra of four heterocyclic thioamides [[(bztzdtH)I2] x I2] (1) (bztzdtH = benzothiazole-2-thione), [(bztzdtH)I2] (2), [[(tzdtH)2I+] x I3- x 2I2] (3) (tzdtH = thiazoline-2-thione), and [[(bzimtH)I2]2 x I2 x 2H2O] (4) (bzimtH = benzimidazole-2-thione) have been studied between ambient pressure and 50 kbar. For 1, generation of I3- ions through disproportionation reactions is evident as the pressure is increased. There are empirical linear correlations between the frequency and (I-I) bond length and the applied pressure. The iodine adduct of thioamide 2 is more sensitive to pressure when compared to the 1 or 4 iodine adducts. This difference in behavior may be attributed to differences in crystal structures or to a lower I-I bond order. Monitoring of other vibrational transitions of the thiomide structure reveals several less important pressure dependences.     

Synthesis and structures of Se analogues of the antithyroid drug 6-n-propyl-2-thiouracil and its alkyl derivatives: formation of dimeric Se-Se compounds and deselenation reactions of charge-transfer adducts of diiodine

Four selenium analogues of the antithyroid drug 6-n-propyl-2-thiouracil (PTU), of formulae RSeU, (R = methyl (Me) (1), ethyl (Et) (2), n-propyl (nPr) (3), and isopropyl (iPr) 4), have been synthesized. Reaction of 1-4 with diiodine in a 1:1 molar ratio in dichloromethane results in the formation of [(RSeU)I(2)] (R = methyl (5), ethyl (6), n-propyl (7) and isopropyl (8)). All compounds have been characterized by elemental analysis, FT-Raman, FT-IR, UV/Vis, (1)H-, (13)C-, (77)Se-1D and -2D NMR spectroscopy, and ESI-MS spectrometric techniques. Recrystallization of 4 from dichloromethane afforded (4CH(2)Cl(2)). Crystals of [(nPrSeU)I(2)] (7), a charge-transfer complex, were obtained from chloroform solutions, while crystallization of 6 and 7 from acetone afforded the diselenides [N-(6-Et-4-pyrimidone)(6-EtSeU)(2)] (92 H(2)O) and [N-(6-nPr-4-pyrimidone)(6-nPrSeU)(2)] (10) as oxidation products. Recrystallization of 7 from methanol/acetonitrile solutions led to deselenation with the formation of 6-n-propyl-2-uracil (nPrU) (11). [(nPrSeU)I(2)] (7) was found to be a charge-transfer complex with a Se--I bond. These results are discussed in relation to the mechanism of action of antithyroid drugs.     

The Role of Titanium Dioxide on the Hydration of Portland Cement: A Combined NMR and Ultrasonic Study

Titanium dioxide (TiO₂) is an excellent photocatalytic material that imparts biocidal, self-cleaning and smog-abating functionalities when added to cement-based materials. The presence of TiO₂ influences the hydration process of cement and the development of its internal structure. In this article, the hydration process and development of a pore network of cement pastes containing different ratios of TiO₂ were studied using two noninvasive techniques (ultrasonic and NMR). Ultrasonic results show that the addition of TiO₂ enhances the mechanical properties of cement paste during early-age hydration, while an opposite behavior is observed at later hydration stages. Calorimetry and NMR spin–lattice relaxation time T₁ results indicated an enhancement of the early hydration reaction. Two pore size distributions were identified to evolve separately from each other during hydration: small gel pores exhibiting short T₁ values and large capillary pores with long T₁ values. During early hydration times, TiO₂ is shown to accelerate the formation of cement gel and reduce capillary porosity. At late hydration times, TiO₂ appears to hamper hydration, presumably by hindering the transfer of water molecules to access unhydrated cement grains. The percolation thresholds were calculated from both NMR and ultrasonic data with a good agreement between both results.     

Lowest-energy structures of water clusters (H2O)11 and (H2O)13

We employed a four-step searching/screening approach to determine best candidates for the global minima of (H2O)11 and (H2O)13. This approach can be useful when there exist a large number of low-lying and near-isoenergetic isomers, many of which have the same oxygen-skeleton structure. On the two new candidates for the global minimum of (H2O)11, one isomer can be viewed as placing the 11th molecule onto the side of the global minimum of (H2O)10 and the other can be viewed as removing the 12th molecule from the middle layer of the global minimum of (H2O)12. The three leading lowest-energy clusters of (H2O)13 can all be built starting from the global minimum of (H2O)12, with the difference being in the location of the 13th water molecule.     

In situ coating of flame-made TiO2 particles with nanothin SiO2 films

Rutile TiO2 particles made by flame spray pyrolysis (FSP) were coated in a single step with SiO2 layers in an enclosed flame reactor. This in situ particle coating was accomplished by a hollow ring delivering hexamethyldisiloxane (HMDSO) vapor (precursor to SiO2) through multiple jets in swirl cross-flow to Al-doped nanostructured rutile TiO2 aerosol freshly made by FSP of a solution of titanium tetraisopropoxide and aluminum sec-butoxide in xylene. The as-prepared powders were characterized by (scanning) transmission electron microscopy (STEM and TEM), energy dispersive X-ray analysis, X-ray diffraction, nitrogen adsorption, electrophoretic mobility, DC plasma optical emission (DCP-OES), and Fourier transform infrared (FT-IR) spectroscopy. The coating quality was assessed further by the photocatalytic oxidation of isopropyl alcohol to acetone. The effect of HMDSO injection point and vapor concentration on product particle morphology was investigated. The titania particles were uniformly SiO2-coated with controlled and uniform thickness at a production rate of about 30 g h(-1) and exhibited limited, if any, photoactivity. In contrast, spraying and combusting equivalent mixtures of the above Si/Al/Ti precursors in the above reactor (without delivering HMDSO through the hollow ring) resulted in particles segregated in amorphous (SiO2) and crystalline (TiO2) domains which exhibited high photocatalytic activity.     

Infrared spectrum of NH4+(H2O): evidence for mode specific fragmentation

The gas phase infrared spectrum (3250-3810 cm-1) of the singly hydrated ammonium ion, NH4+(H2O), has been recorded by action spectroscopy of mass selected and isolated ions. The four bands obtained are assigned to N-H stretching modes and to O-H stretching modes. The N-H stretching modes observed are blueshifted with respect to the corresponding modes of the free NH4+ ion, whereas a redshift is observed with respect to the modes of the free NH3 molecule. The O-H stretching modes observed are redshifted when compared to the free H2O molecule. The asymmetric stretching modes give rise to rotationally resolved perpendicular transitions. The K-type equidistant rotational spacings of 11.1(2) cm-1 (NH4+) and 29(3) cm-1 (H2O) deviate systematically from the corresponding values of the free molecules, a fact which is rationalized in terms of a symmetric top analysis. The relative band intensities recorded compare favorably with predictions of high level ab initio calculations, except on the nu3(H2O) band for which the observed value is about 20 times weaker than the calculated one. The nu3(H2O)/nu1(H2O) intensity ratios from other published action spectra in other cationic complexes vary such that the nu3(H2O) intensities become smaller the stronger the complexes are bound. The recorded ratios vary, in particular, among the data collected from action spectra that were recorded with and without rare gas tagging. The calculated anharmonic coupling constants in NH4+(H2O) further suggest that the coupling of the nu3(H2O) and nu1(H2O) modes to other cluster modes indeed varies by orders of magnitude. These findings together render a picture of a mode specific fragmentation dynamic that modulates band intensities in action spectra with respect to absorption spectra. Additional high level electronic structure calculations at the coupled-cluster singles and doubles with a perturbative treatment of triple excitations [CCSD(T)] level of theory with large basis sets allow for the determination of an accurate binding energy and enthalpy of the NH4+(H2O) cluster. The authors' extrapolated values at the CCSD(T) complete basis set limit are De [NH4+-(H2O)]=-85.40(+/-0.24) kJ/mol and DeltaH(298 K) [NH4+-(H2O)]=-78.3(+/-0.3) kJ/mol (CC2), in which double standard deviations are indicated in parentheses.     

An FPGA-based Integrated MapReduce Accelerator Platform

MapReduce is a programming framework for distributed systems that is used to automatically parallelize and schedule the tasks to distributed resources. MapReduce is widely used in data centers to process enterprise databases and Big Data. This paper presents a novel MapReduce accelerator platform based on FPGAs that can be used to speedup the processing of the MapReduce data. The proposed platform consists of specialized hardware accelerators for the Map tasks and a shared configurable accelerator for the Reduce tasks. The hardware accelerators for the Map tasks are developed using a modified source-to-source High-level Synthesis (HLS) tool while the Reduce accelerator is based on a novel hashing scheme. The proposed scheme is implemented, mapped and evaluated to a Virtex 7 FGPA. The performance evaluation is based on a benchmark suite that represent typical MapReduce applications and it shows that the proposed scheme can achieve up to 2 orders of magnitude energy reduction compared to General Purpose Processors (GPPs).