Evaluation of the combinative application of SDS and sodium deoxycholate to the LC–MS‐based shotgun analysis of membrane proteomes

SDS and sodium deoxycholate (SDC) as two representative detergents have been widely used in LC–MS/MS‐based shotgun analysis of membrane proteomes. However, some inherent disadvantages limit their applications such as interference with MS analysis or their weak ability to disrupt membranes. To address this, the combinative application of SDS and SDC was developed and evaluated in our study, which comprehensively used the strong ability of SDS to lyse membranes and solubilize hydrophobic membrane proteins, and the high efficiencies of an optimized acetone precipitation method and SDC in sample clean‐up, protein recovery, and redissolution and digestion of precipitated proteins. The comparative study using a rat‐liver‐membrane‐enriched sample showed that, compared with other three commonly used methods including the filter‐aided sample preparation strategy, the combinative method not only increased the identified number of total proteins, membrane proteins, and integral membrane proteins by an average of 19.8, 23.9, and 24.8%, respectively, but also led to the identification of the highest number of matching peptides. All these results demonstrate that the method yielded better recovery and reliability in the identification of the proteins especially highly hydrophobic integral membrane proteins than the other three methods, and thereby has more potential in shotgun membrane proteomics.     

HPLC-DAD data coupled with second-order calibration method applied to food analysis: Simultaneous determination of six benzoylurea insecticides in various fruit samples by selecting time region of chromatogram

This work presents a novel application of second-order calibration based on self-weighted alternating trilinear decomposition(SWATLD)algorithm for analyzing the HPLC-DAD data.The proposed method makes it possible to simultaneously determine teflubenzuron,hexaflumuron,flufenoxuron,chlorfluazuron,diflubenzuron and benzoylurea in different fruit samples,i.e.pear,apple and banana,in the selected time region of chromatogram.The concentration,elution time and spectral information of these benzoylurea insecticides are selectively extracted from complex matrices even in the presence of unknown interferences.The root-mean-square error of prediction(RMSEP)and figures of merit,including sensitivity(SEN),selectivity(SEL)and limit of detection(LOD)are employed to access the performance of the method.The LODs obtained for these insecticides are within the range 0.017–0.26 ppm in pears,0.039–0.33 ppm in apples,0.041–0.44 ppm in bananas,respectively.Such a chemometrics-based protocol holds great potential to be extended as a promising alternative for more practical applications in food safety and quality monitoring.     

自动化势能面搜索方法新进展

本文简要介绍了势能面搜索的两个主要问题,即过渡态搜索和全局势能面搜索,并针对这两个问题介绍了本研究组最近发展的3种方法,即限制最小化双子算法、偏置势函数辅助限制性最小化双子算法以及势能面随机行走方法．这3种方法均只需计算一阶梯度,能够用于快速自动化的搜索过渡态以及势能面．通过几个典型例子分别说明了3种方法的特点及优势．     

Stacking‐Induced Diamagnetic/Paramagnetic Conversion of Imidazo[1,2‐a]pyridin‐2(3 H)‐one Derivatives: Near‐Infrared Absorption and Magnetic Properties in the Solid State

Herein, we present three imidazo[1,2‐a]pyridin‐2(3 H)‐one derivatives that are diamagnetic in solution, but paramagnetic in the solid state, possibly owing to a stacking‐induced formation of phenoxide‐type radicals. Notably, a larger bathochromic shift of the absorption (even up to the near‐ infrared region) of these three compounds was observed in the solid state than in solution, which was attributable to the ordered columnar stacking arrangements or their single‐electron character as radicals in the solid state. Interestingly, compared to that in solution, (E)‐3‐(pyridin‐4′‐ylmethylene)imidazo[1,2‐a]pyridine 2(3 H)‐one displayed a largely red‐shifted emission (centered at 660 nm, with tailing above 800 nm) in the solid state. A larger bathochromic shift (260 nm) of the emission is an indication of better order and tight stacking in the solid state, which is brought about by the rigid and polar acceptor. These three compounds also reveal different magnetic susceptibilities at 300 K, thus implying that they possess various columnar stacking structures. Most interestingly, these three radicals exhibit unusual ferromagnetic‐to‐antiferromagnetic phase transitions, which can be attributed to anisotropic contraction and non‐uniform slippage of the columnar stacking chains.     

Synthesis and Photocatalytic Properties of Nano‐crystalline In2O3

A nano‐crystalline In₂O₃ was synthesized using calcinations methods and was used as a photocatalyst to degrade sulfan blue (SB) dye. In addition, this study addresses the conditions of the degradation and the factors that influenced the catalysis. In₂O₃ was prepared by calcining In(OH)₃ at heat ranges of 100–700 °C for 24 h. The In₂O₃ was characterized using field emission scanning electron microscopy (FE‐SEM), an X‐ray diffractometer (XRD), thermogravimetric analysis (TGA), and high‐resolution X‐ray photoelectron spectroscopy (HR‐XPS). The activities of these samples were tested for the photocatalytic degradation of SB dye. The results indicated that the In(OH)₃ that was calcined at 300 °C for 24 h had the best performance.     

Unusual Spirodecane Sesquiterpenes and a Fumagillol Analogue from Cordyceps ophioglossoides

Investigation of the cultured mycelia of Cordyceps ophioglossoides resulted in the isolation and characterization of three new unusual spiro[4.5]decane sesquiterpenes, cordycepol A ( 1 ), cordycepol B ( 2 ), and cordycepol C ( 3 ), and a new fumagillol analogue, cordycol ( 4 ). Their structures were established by spectroscopic means. The cytotoxic activities were also evaluated, compounds 3 and 4 showing their IC₅₀ values in the range of 12–33 μg/ml against HeLa and HepG2 (Table 3). In addition, 3 and 4 were not obviously harmful towards normal liver cell lines LO2, showing IC₅₀ values above 80 μg/ml.     

Novel Synthesis of Tri- and Penta-Coordinate Phosphorous Saccharide

Two novel tricoordinate phosphorous saccharides, methyl 4,6-O-benzylidene- α -D-glucopyranoside 2,3-cyclic phosphite ethyl ester 3 and its mannoside analogue 5 were synthesized by the reaction of protected pyrannosides (1 and 4) with ethyl dichlorophosphite 2. Addition of 2,3-butanedione to 3 resulted in the formation of pentacoordinate phosphorous compound 6.     

Synthesis of Novel Pyrrolo[1′,5′‐a]‐1,8‐naphthyridine Derivatives through a Facile One‐Pot Process

Novel pyrrolo[1′,5′‐a]‐1,8‐naphthyridine compounds have been synthesized through a facile one‐pot process by the reaction of the corresponding 1,8‐naphthyridines with aliphatic anhydride. The structures were established by spectroscopic data. Further X‐ray crystal analysis of 4′‐acetyl‐7‐methyl‐pyrrolo[1′,5′‐a]‐1,8‐naphthyridine (1) identifies its intriguing molecular structure and reveals the strong π‐π stacking.