Influence of tetrahydrofuran on reactivity, aggregation, and aggregate structure of dimethylcuprates in diethyl ether

The comprehension of factors influencing the reactivity of organocuprates is still far from enabling a rational control of their reactions. Especially the degree of aggregation and structures of organocuprates are the focus of discussion about the factors affecting their reactivity. Therefore, this study combines kinetic measurements and NMR investigations to elucidate the influence of disaggregation via addition of tetrahydrofuran (THF) on the reactivity and aggregate structure of Gilman cuprates. As model systems, Me(2)CuLi.LiI (1.LiI) and Me(2)CuLi.LiCN (1.LiCN) in diethyl ether (DEE) were chosen; as model reaction, the 1,4-addition to 4,4-dimethylcyclohex-2-enone. The kinetic data show for 1.LiI a pronounced acceleration effect upon addition of distinct amounts of THF, whereas the reactivity of 1.LiCN continuously decreases with the addition of THF. Series of NMR diffusion measurements as well as (1)H-(7)Li heteronuclear Overhauser effect (HOE), and (1)H-(1)H nuclear Overhauser effect (NOE) spectra show different structural influences of THF on 1.LiI and 1.LiCN. For 1.LiI, small salt units are separated from the cuprate aggregate by THF. In contrast to this, THF disaggregates the oligomeric structures of 1.LiCN, while the core structures remain intact with salt attached. Thus, the reactivity of 1.LiI seems to be fine-tuned through distinct amounts of salt or THF, whereas the decreasing reactivity of 1.LiCN correlates with the disaggregation of oligomers via THF. Thus, for synthetic chemists with reactivity problems in specific reactions of iododialkylcuprates, the addition of small amounts of THF might be useful to enhance the reactivity. In addition to these structure-reactivity studies, the CN(-) group is shown to be directly attached to the cuprate moiety via a combination of (1)H-(13)C HOE- and (1)H-(1)H NOEs. This represents the first direct experimental evidence in solution for the position of the CN(-) group relative to the cuprate moiety in cyano-Gilman cuprates.     

Influence of cetyltrimethylammonium bromide on phosphatidylcholine-coated capillaries

Large unilamellar vesicles of egg-phosphatidylcholine (eggPC), a naturally occurring phospholipid, were used in capillary electrophoresis (CE) for semi-permanent coating of fused silica capillaries. The stability of the phospholipid coating was tested at different cetyltrimethylammonium bromide (CTAB) concentrations with and without CaCl₂ present in the coating solution. The effect of physical factors influencing the coating stability (e.g. duration of the coating time, storage temperature of the coating solution) were also studied. Standing overnight in background electrolyte (BGE) solution did not alter the eggPC phospholipid coating noticeably. The performance of the coating was tested with a mixture of basic proteins (lysozyme, ribonuclease A and -chymotrypsinogen A). Highest efficiencies (over 200,000 plates m^–1) were achieved when the capillary was filled for 15 h with a liposome solution containing both CTAB and CaCl₂.Electronic Supplementary Material Supplementary material is available for this article at     

Investigation of mixed-mode monolithic stationary phases for the analysis of charged amino acids and peptides by capillary electrochromatography

The potential of N,N-dimethylacrylamide-piperazine diacrylamide-based monolithic stationary phases bearing sulfonic acid groups for electroosmotic flow generation is investigated for the separation of positively charged amino acids and peptides. The capillary columns were used under electrochromatographic but also under purely chromatographic (nano-HPLC) conditions and the separations interpreted as the result of possible chromatographic and electrophoretic contributions. The stationary phases were found to be mechanically stable up to pressures of 190 bar and chemically stable towards a wide variety of organic and hydro-organic mobile phases. In order to investigate the retention mechanism, the salt concentration and the organic solvent content of the (hydro-)organic mobile phase were varied in a systematic manner, taking three aromatic amino acids (phenylalanine, tryptophan, histidine) as model analytes. The respective contributions of electrostatic and hydrophobic and/or hydrophilic interactions were further investigated by varying the charge density and the hydrophobicity of the standard stationary phase. The former was done by varying the amount of charged monomer (vinylsulfonic acid) added during synthesis, the latter by (partially) replacing the interactive monomer (N,N-dimethylacrylamide) by other more hydrophobic monomers. A mixed mode retention mechanism based primarily on electrostatic interactions modified in addition by "hydrophilic" ones seems most suited to interpret the behavior of the amino acids, which stands in contradistinction to the previously investigated case of the behavior of neutral analytes on similar stationary phases. Finally the separation of small peptides was investigated. While the separation of Gly-Phe and Gly-Val was not possible, the separation of Phe-Gly-Phe-Gly and Gly-Phe but also of the closely related Gly-His and Gly-Gly-His could be achieved.     

MODULATION AND DYNAMICS OF PHASE PROPERTIES IN PHOSPHOLIPID MIXTURES DETECTED BY LAURDAN FLUORESCENCE*

Steady-state and dynamic fluorescence properties of 6-lauroyl-2-dimethylaminonaphthalene (Laurdan) have been used to ascertain the coexistence of separate phase domains and their dynamic properties in phospholipid vesicles composed of different mole ratios of dilauroyl- and dipalmitoyl-phosphatidylcholine (DLPC and DPPC, respectively). The recently introduced generalized polarization together with time-resolved emission spectra have been utilized for detecting changes. The results indicate the coexistence of phospholipid phase domains in vesicle compositions in the range between 30 mol% and 70 mol% DPPC in DLPC. Below and above these concentrations a homogeneous phase is observed, with averaged properties. In the case of coexisting phase domains, the properties of each individual phase are largely influenced by the presence of the other phase. Implications on fluctuations between the coexisting phases and on the size and shape of domains are discussed.     

Spectral and photophysical studies of substituted indigo derivatives in their keto forms.

The spectral and photophysical properties of indigo derivatives with di-, tetra-, and hexa-substitution in their neutral (keto) form are investigated in solution. The study comprises absorption and emission spectra, together with quantitative measurements of quantum yields of fluorescence (phi(F)) and singlet oxygen formation (phi(Delta)) and fluorescence lifetimes. The energy difference between the HOMO and LUMO orbitals is dependent on the degree (number of groups) and relative position of substitution. The phi(F) and phi(Delta) values were found to be very low S(0) internal conversion yields and thus, with the other data, to determine the rate constants for all decay processes. From these, several conclusions are drawn. Firstly, the radiationless rate constants, k(NR) , clearly dominate over the radiative rate constants, k(F) , (and processes). Secondly, the main deactivation channel for the compounds in their keto form is the radiationless S(1) approximately approximately -->S(0) internal conversion process. Finally, although the changes are relatively small, internal conversion yield seems to be independent of the overall pattern of substitution. A more detailed investigation of the decay profiles with collection at the blue and red emission of the fluorescence band of indigo and one di-substituted indigo reveals the decays to be bi-exponential and that at longer emission wavelengths these appear to be associated with both rise and decay times indicating that two excited species exist, which is consistent with a keto-excited form giving rise (by fast proton transfer) to the enol-form of indigo. Evidence is presented which supports the idea that intramolecular (and possibly some intermolecular) proton transfer can explain the high efficiency of internal conversion in indigo.     

Phosphorylation of RAF Kinase Dimers Drives Conformational Changes that Facilitate Transactivation

RAF kinases are key players in the MAPK signaling pathway and are important targets for personalized cancer therapy. RAF dimerization is part of the physiological activation mechanism, together with phosphorylation, and is known to convey resistance to RAF inhibitors. Herein, molecular dynamics simulations are used to show that phosphorylation of a key N‐terminal acidic (NtA) motif facilitates RAF dimerization by introducing several interprotomer salt bridges between the αC‐helix and charged residues upstream of the NtA motif. Additionally, we show that the R‐spine of RAF interacts with a conserved Trp residue in the vicinity of the NtA motif, connecting the active sites of two protomers and thereby modulating the cooperative interactions in the RAF dimer. Our findings provide a first structure‐based mechanism for the auto‐transactivation of RAF and could be generally applicable to other kinases, opening new pathways for overcoming dimerization‐related drug resistance.     

Insights Into the Allosteric Inhibition of the SUMO E2 Enzyme Ubc9

Conjugation of the small ubiquitin‐like modifier (SUMO) to protein substrates is an important disease‐associated posttranslational modification, although few inhibitors of this process are known. Herein, we report the discovery of an allosteric small‐molecule binding site on Ubc9, the sole SUMO E2 enzyme. An X‐ray crystallographic screen was used to identify two distinct small‐molecule fragments that bind to Ubc9 at a site distal to its catalytic cysteine. These fragments and related compounds inhibit SUMO conjugation in biochemical assays with potencies of 1.9–5.8 mm . Mechanistic and biophysical analyses, coupled with molecular dynamics simulations, point toward ligand‐induced rigidification of Ubc9 as a mechanism of inhibition.     

Linear and Bent Cp*2Si: Reversible Phase Transition of a Key Molecule

The solid-state structure of decamethylsilicocene Cp*₂Si with a bent and a linear molecule in the same unit cell was so far considered an exception in relation to the structures of its all-bent heavier analogues Cp*₂E with E=Ge, Sn, Pb. Here, we present the solution to this conundrum by reporting a low-temperature phase, where all three symmetrically independent molecules are present in a bent formation. This reversible enantiotropic phase transition occurs in the temperature range between 80 K and 130 K and provides a rationale for the unexpected linear molecule based in entropy beyond hand-waving explanations such as electronic reasons or packing effects.     

Synthesis of Bifunctional Lipoxin-Derived Enzyme-Triggered CO-Releasing Molecules (LipET-CORMs)

In an attempt to develop new anti-inflammatory agents which act by co-release of carbon monoxide (CO) and a specialized pro-resolving mediator, we designed conjugates of a lipoxin A₄ analogue and an acyloxycyclohexadiene-Fe(CO)₃ complex as an esterase-triggered CO-releasing molecule (ET-CORM). After adjustment of the protecting group strategy, two of such compounds were successfully prepared by total synthesis (12 steps; 4–5 % overall yield) starting from deoxy-d -ribose and exploiting a Wittig olefination and an intermolecular Heck reaction as key C−C bond-forming steps. A crucial late reduction of an aryl-ketone moiety in the presence of a highly sensitive dienol ester functionality was achieved with BH₃-SMe₂ in the presence of catalytic amounts of NaBH₄. Both target compounds were dose-dependently toxic towards cultured human umbilical vein endothelial cells (HUVEC), with LipET-CORM 1-A being slightly more toxic. While induction of heme oxygenase 1 (HO-1) in HUVEC was observed for both compounds, they did not inhibit TNF-α-mediated VCAM-1 expression in these cells. In M2 polarized macrophages HO-1 expression was more pronounced as compared to M1 polarized macrophages. In both types of macrophages HO-1 expression was downregulated by lipopolysaccharide, but only in M2 macrophages HO-1 expression was rescued by LipET-CORM. 15-Lipoxygenase (15-LO) was only expressed in M2 macrophages and was not influenced by LipET-CORM. Collectively our data demonstrate that LipET-CORMs induce HO-1 expression in endothelial cells and M2 polarized macrophages. The role of the intra-cellular released lipoxin A₄ in resolution of inflammation, however, remains to be assessed.     

A mechanistic study on the oxidation of hydrazides: application to the tuberculosis drug isoniazid

Herein we report radical trapping experiments that support the formation of an acyl radical as the active species from the oxidation of isoniazid; these data provide insight into the mechanism of hydrazide oxidation.