Evidence for Interchange Ligand‐Exchange Processes on Solvated Beryllium Cations

The ligand‐exchange mechanism of solvated Be²⁺ cations has been studied by means of DFT calculations (RB3LYP/6‐311+G**). Ligand exchange around [BeL₄]²⁺, where L=H₂O, NH₃, CO₂, formaldehyde (H₂CO), HCN, N₂, and CO, was found to follow an associative interchange (I_a) process in all cases. The size of the activation barrier is almost independent of the type of donor atom, and depends mainly on the hybridization undergone by the donor atom. This, in turn, suggests that steric effects play a major role in solvent‐ and ligand‐exchange reactions in Be²⁺ systems.     

Scalar-type spectral operators and holomorphic semigroups

We show that a linear operator (possibly unbounded), A, on a reflexive Banach space, X, is a scalar-type spectral operator, with non-negative spectrum, if and only if the following conditions hold.

1. A generates a uniformly bounded holomorphic semigroup {e?^zA}_Re(z)≥0.
2. If \(F_N (s) \equiv \int_{ - N}^N {\tfrac{{\sin (sr)}}{r}} e^{irA} dr\) , then {‖F_N‖} _N=1 ^∞ is uniformly bounded on [0,∞) and, for all x in X, the sequence {F_N(s)x} _N=1 ^∞ converges pointwise on [0, ∞) to a vector-valued function of bounded variation.

The projection-valued measure, E, for A, may be constructed from the holomorphic semigroup {e^?zA}_Re(z)≥0 generated by A, as follows. $$\frac{1}{2}(E\{ s\} )x + (E[0,s)) x = \mathop {\lim }\limits_{N \to \infty } \int_{ - N}^N {\frac{{\sin (sr)}}{r}} e^{irA} x\frac{{dr}}{\pi }$$ for any x in X.     

STEREOELECTRONIC PROPERTIES OF PHOTOSYNTHETIC AND RELATED SYSTEMS — V. AB INITIO CONFIGURATION INTERACTION CALCULATIONS ON THE GROUND AND LOWER EXCITED SINGLET AND TRIPLET STATES OF ETHYL CHLOROPHYLLIDE a AND ETHYL PHEOPHORBIDE a

Abstract— Ab initio configuration interaction wavefunctions and energies are reported for the ground state and many low-lying excited singlet and triplet states of ethyl pheophorbide a (Et-Pheo a) and ethyl chlorophyllide a (Et-Chl a), and are employed in an analysis of the electronic absorption spectra of these systems. In both molecules the visible spectrum is found to consist of transitions to the two lowest-lying ¹(π, π*) states, S₁ and S₂. The configurational compositions of S₁ and S₂ in both molecules are similar, and are described qualitatively in terms of a four-orbital model. The S₁← S₀ transition in each case is predicted to be intense, and is largely in-plane y-polarized, while the S₂← S₀ transition is predicted to be extremely weak and in-plane polarized. The orientation of the S₂← S₀ transition dipole is not conclusively established in the present calculations. The Soret band in both molecules is composed of transitions to no less than ten states (S_3-S₁₂ in Et-Chl a and S₃-S₇S₉-S₁₂. and S₁₄ in Et-Pheo a), which exhibit primarily (π, π*) character. The configurational compositions of these states are generally a complex mixture of excitations from both occupied macrocyclic π molecular orbitals and occupied orbitals with electron density in the cyclopen-tanone ring and the carbomethoxy chain. No clear correspondences are evident between respective Soret states of the two systems. Transitions to these states are generally intense and display a variety of in-plane polarizations. Two additional Soret states of Et-Pheo a, S₈ and S₁₃, exhibit primarily (n. π*) character. S₈ is characterized by excitations from u and non-bonding regions of the carbomethoxy chain, while S₁₃ is described by n →π* excitations involving the nitrogen atom of ring II. No corresponding (n, π*) states were found for Et-Chl a. In both molecules the lowest two triplet states, T₁ and T₂, are found to lie lower in energy than S₁. while T, and S₁ are approximately degenerate. The configurational compositions of T₁-T₄ of both molecules are nearly identical, and may be described by a four-orbital model. However, the compositions of T₁-T₄ differ sharply from those of S₁ and S₂. A number of higher-lying ³(π, π*) states of both molecules (T₅-T₁₃ in Et-Chi a and T₈-T₉, T₁₁-T₁₃ in Et-Pheo a) are found to have energies similar to the singlet Soret states, relative to S₀. They are characterized by a complex mixture of configurations which do not include significant contributions involving the four-orbital model. In addition, two ³(n, π*) states of Et-Pheo a, T₁₀ and T₁₄, are found, which are somewhat analogous to S₈ and S₁₃. Additional data presented include the charge distributions and molecular dipole moments of the S₀. S₁, and T₁ states of both molecules, as well as energies and oscillator strengths of computed S_n←S₁ and T_n←₁ transitions.     

Relaxation dynamics in glycerol-water mixtures: I. Glycerol-rich mixtures

We discuss the relaxation dynamics of glycerol-water mixtures, as studied by dielectric spectroscopy in the frequency range from 1 Hz to 250 MHz and at temperatures between 173 and 323 K. The experimental results obtained for the glycerol-rich mixtures suggest that the main dielectric relaxation process, as well as the so-called high-frequency "excess wing" (EW) and dc conductivity, follow the same temperature dependence. This result indicates that all of these processes are induced by the same molecular origin. A new phenomenological function is proposed to describe the whole dielectric spectrum in the covered frequency range, and some possible mechanisms of dielectric behaviors through the dc conductivity, the main relaxation process, and the EW are discussed.     

Preparation of polycrystalline Ti-Al-O films by magnetron sputtering ion plating: constitution, structure and morphology

Ti-Al-O layers were deposited on Si-<100> wafers at 500 °C by means of reactive magnetron sputtering ion plating (R-MSIP). An Al-target was sputtered in rf-mode and a Ti-target in dc-mode simultaneously by an oxygen/argon plasma. The influence of the Al- and Ti-sputter powers on composition, structure, and morphology of the Ti-Al-O layers and the binding states of the components were investigated. The analysis with EPMA, XPS, AES and TEM yielded the following results: Ti-Al-O coatings with different Ti, Al, and O contents in the range of TiO₂ to Al₂O₃ were grown. TEM structure analysis revealed: the pure TiO₂ film consisted of the tetragonal phases rutile and anatase; the two structures were found in the titanium-rich Ti-Al-O film, too, but with significant smaller lattice constants. The aluminium-rich Ti-Al-O film displayed the same cubic structure of γ-Al₂O₃ as determined for the pure Al₂O₃ film, but the lattice constant is significant lower. Evaluation of the TEM pattern of the film with a Ti/Al ratio of 0.8 indicates a hexagonal structure with lattice constants similar to those of κ′-Al₂O₃. All films are nanocrystalline and not textured. Received: 24 June 1996 / Revised: 27 December 1996 / Accepted: 4 January 1997     

Addressing the metabolic activation potential of new leads in drug discovery: a case study using ion trap mass spectrometry and tritium labeling techniques

Metabolic activation of drug candidates to electrophilic reactive metabolites that can covalently modify cellular macromolecules may result in acute and/or idiosyncratic immune system-mediated toxicities in humans. This presents a significant potential liability for the future development of these compounds as safe therapeutic agents. We present here an example of an approach where sites of metabolic activation within a new drug candidate series were rapidly identified using online liquid chromatography/multi-stage mass spectrometry on an ion trap mass spectrometer. This was accomplished by trapping the reactive intermediates formed upon incubation of compounds with rat and human liver microsomes as their corresponding glutathione conjugates and mass spectral characterization of these thiol adducts. Based on the structures of the GSH adducts identified, potential sites and mechanisms of bioactivation within the chemical structure were proposed. These metabolism studies were interfaced with iterative structural modifications of the chemical series in order to block these bioactivation sites within the molecule. This strategy led to a significant reduction in the propensity of the compounds to undergo metabolic activation as evidenced by reductions in the irreversible binding of radioactivity to liver microsomal material upon incubation of tritium-labeled compounds with this in vitro system. With the efficiency and throughput achievable with such an approach, it appears feasible to identify and address the metabolic activation potential of new drug leads during routine metabolite identification studies in an early drug discovery setting.     

Small molecules as inhibitors of cyclin-dependent kinases

Cell division (mitosis) is one of the basic requirements for multicellular oranisms. The capability of a cell to replicate enables a complex assembly to be created. Faulty regulation of the control mechanism in the cell cycle leads to an excessive cell proliferation and is the cause of cancer. The key position of the cyclin-dependent kinases (CDKs) and their direct partners, as well as the fact that the majority of malign illnesses show defects in at least one of these key players of the cell cycle, is of great interest for the development of low-molecular-weight CDK inhibitors. In this Review an overview of the different structural classes of ATP-competitive inhibitors of CDKs are given, whose devlopment was aimed at battling cancer. The Review shows how far the development of selective CDK inhibitors has progressed and to what extent the expectations for such drugs have so far been fulfilled.     

Molecular dynamics simulations of a nucleoside analogue of 1,4-dihydro-4-oxoquinoline-3-carboxylic acid synthesized as a potential antiviral agent: Conformational studies in vacuum and in water

Conformational analysis of nucleosides may have direct applications to the structure–activity relationship (SAR) studies and in the design of new drug candidates. Although conformational analysis may be accessed in many different ways, in this work it was performed using molecular dynamics (MD) simulation in order to study the dynamic behavior of a nucleoside derivative of 1,4-dihydro-4-oxoquinoline-3-carboxylic acid, synthesized by our group as a potential antiviral agent. The MD simulation was carried out during 10 ns in vacuum and in a box of water at two different temperatures (i.e., 300 and 600 K) using the AMBER force field. The in vacuum MD simulation results are in agreement with the crystallographic structure and with the DFT calculations of the nucleoside, revealing the anti conformer as the more stable one. The simulation in water, however, shows that both conformers may exist at 300 K, the temperature of the in vivo and in vitro assays, revealing that both the syn and anti conformers should be considered in a MD simulation study of the inhibitor–enzyme complex. Simulations are also in agreement with the NOE experiment, which shows that the anti conformer is the preferential one in DMSO-d6 solution at 298 K.     

Autocorrelated 13c-13c double quantum coherence two-dimensional nmr spectroscopy: Utilization of a modified version of the technique as an adjunct in the total assignment of the 1h- and 13c-nmr spectra of the mutagen phenanthro[3,4-b]thiophene

Development of successively higher field nmr spectrometers has facilitated the study of increasingly more complex molecules, although smaller molecules such as phenanthro[3,4-b]thiophene still offer very substantial assignment problems because of the highly congested nature of their ¹H- and ¹³C-nmr spectra. Assignments of such spectra, if they are to be unequivocal, frequently require the utilization of two-dimensional nmr spectroscopic techniques. Total assignments of the ¹H- and ¹³C-nmr spectra of phenanthro[3,4-b]thiophene are reported. Assignments were based on a conventional high resolution 500 MHz ¹H-nmr spectrum, autocorrelated two-dimensional ¹H-nmr spectra (COSY), two-dimensional ¹H-¹³C chemical shift correlation spectra and a modified version of autocorrelated ¹³C-¹³C double quantum coherence two-dimensional nmr spectroscopy. From NOE measurements, a separation of 1.99 Å between H1 and H11 was computed, suggesting that phenanthro[3,4-b]thiophene has a pronounced helical conformation in solution.     

Syntheses of 3,7-dimethylpentadecan-2-ols from intermediates formed from co-oligomerisation reactions of butadiene with diethyl malonate and acetaldehyde

The products of the reaction of butadiene with diethyl malonate catalysed by a palladium complex and of butadiene with acetaldehyde catalysed by a nickel(0) complex have been used in two syntheses of 3,7-dimethylpentadecan-2-ol.