Anthozoa red fluorescent protein in biosensing

The identification and cloning of a red fluorescent protein (DsRed) obtained from Anthozoa corals has provided an alternative to commonly used green fluorescent proteins (GFPs) in bioanalytical and biomedical research. DsRed in tandem with GFPs has enhanced the feasibility of multicolor labeling studies. Properties of DsRed, for example high photostability, red-shifted fluorescence emission, and stability to pH changes have proven valuable in its use as a fluorescent tag in cell-biology applications. DsRed has some limitations, however. Its slow folding and tendency to form tetramers have been a hurdle. Several different mutational studies have been performed on DsRed to overcome these problems. In this paper, applications of DsRed in biosensing, specifically in FRET/BRET assays, whole-cell assays, and in biosensors, is discussed. In the future, construction of DsRed mutants with unique characteristics will further expand its applications in bioanalysis.     

Fluctuating flow of an elastico-viscous fluid along an infinite porous plate with an applied magnetic field

The problem of oscillating free stream flow of an elastico-viscous, incompressible, and electrically conducting fluid along an infinite plate with suction varying periodically with time, is considered in the presence of a transverse magnetic field. The effect of the elasticity of the fluid, the magnetic fluid, and the fluctuation of suction velocity on the velocity and the skin friction is examined.     

Densely functionalized 1,2-dihydrobenzo[b][1,6]naphthyridines: one-pot synthesis via sequential Ugi and Heck reactions

A facile one-pot synthesis of functionalized 1,2-dihydrobenzo[b][1,6]naphthyridines is described via sequential Ugi four components using 2-chloroquinoline-3-carboxaldehydes, allyl amine, acetic acid, isocyanides and ligand free Heck reactions in good yields.     

Single‐Molecule Mechanochemical Sensing Using DNA Origami Nanostructures

While single‐molecule sensing offers the ultimate detection limit, its throughput is often restricted as sensing events are carried out one at a time in most cases. 2D and 3D DNA origami nanostructures are used as expanded single‐molecule platforms in a new mechanochemical sensing strategy. As a proof of concept, six sensing probes are incorporated in a 7‐tile DNA origami nanoassembly, wherein binding of a target molecule to any of these probes leads to mechanochemical rearrangement of the origami nanostructure, which is monitored in real time by optical tweezers. Using these platforms, 10 pM platelet‐derived growth factor (PDGF) are detected within 10 minutes, while demonstrating multiplex sensing of the PDGF and a target DNA in the same solution. By tapping into the rapid development of versatile DNA origami nanostructures, this mechanochemical platform is anticipated to offer a long sought solution for single‐molecule sensing with improved throughput.     

Divalent NI Compounds: Identifying new Carbocyclic Carbenes to Design Nitreones using Quantum Chemical Methods

Nitreones are compounds with oxidation state 1 at the nitrogen, these compounds carry formal positive charge as well as two lone pairs of electrons at nitrogen center. These compounds are also known as divalent N^I compounds and can be represented with the general formula L → N⁺ ← L, where L is an electron donating ligand. In the recent past, several divalent N^I compounds have been reported with L = N-heterocyclic carbene (NHC), remote N-heterocyclic carbene (rNHC), carbocyclic carbene (CCC) and diaminocarbene. Recently, our group reported that a novel six-membered CCC (cyclohexa-2,5-diene-4-[diaminomethynyl]-1-ylidene) can stabilize N⁺ center in nitreones. As an independent carbene, this species is very unstable. In this work, modulation of this CCC using (a) annulation, (b) heterocyclic ring modification, (c) substitutions adjacent to the carbenic carbon, (d) exocyclic double bond insertion and (e) ring contraction, has been reported. These modulations and quantum chemical analyses helped in the identification of five new six-membered CCCs which carry improved donation and stability properties. Further, these CCCs were employed in the design of new divalent N^I compounds (nitreones) which carry coordination bonds between ligands and N⁺ center. The molecular and electronic structure properties, and the donor→acceptor coordination interactions present in the resultant low oxidation state divalent N^I compounds have been explored.     

Self-Assembled Structures of Diglycerol Monolaurate- and Monomyristate in Olive Oil

We have investigated the phase behavior and self-assembled structures of diglycerol monolaurate-and monomyristate (abbreviated as C₁₂G₂ and C₁₄G₂, respectivley) in olive oil over a wide range of temperatures and compositions. At lower temperatures, both the surfactants appear in solid state (α-solid), which does not swell with olive oil. The α-solid transforms into lamellar liquid crystal (L_α) phase upon heating and the solid melting temperature is practically constant at all surfactant/oil compositions, but the C₁₂G₂ melts earlier than the C₁₄G₂. There appear the dispersions of L_α phase and α-solid in the dilute regions of the C₁₂G₂/olive oil and the C₁₄G₂/olive oil systems, respectively, at 25°C. The L_α phase can solubilize some amount of olive oil, but as the oil concentration increases the excess oil separates out from the L_α phase, and there appears L_α dispersion in the dilute surfactant concentration region. The L_α phase eventually transforms into isotropic solutions (reverse micelles) with further heating. The structures (shape and size) of the reverse micelles have been characterized by small-angle x-ray scattering technique. It has found that the C₁₂G₂ and C₁₄G₂ surfactants form reverse rod-like micelles in olive oil above the L_α melting temperature and the micellar size increases with surfactant concentration, but decreases with temperatures.     

Interfacial Properties of Aqueous Nonionic Fluorocarbon Surfactant Solutions

The equilibrium, dynamic surface tensions, and surface dilatational elasticity of aqueous solutions of nonionic fluorocarbon surfactant are reported. The critical micellar concentration, CMC (0.023 mM) and equilibrium surface tension (24.6 m N . m^?1) at CMC were measured by Wilhelmy plate method for aqueous solution of C₈F₁₇SO₂N(C₃H₇)(C₂H₄O)_nH (n=20), abbreviated as EF122A. The surface tension decay is slower for C₈F₁₇SO₂N(C₃H₇)(C₂H₄O)_nH (n=10) system, abbreviated as EF122B compared to the EF122A system over short time region, which indicates the slow transport of the surfactant molecules to the surface. The relaxation time for surface tension decay is estimated by fitting a series of exponentials to the dynamic surface tension data and it decreases with temperature for EF122A. Slow exchange of monomers between bulk and interface is reflected in the high elasticity value of the air‐liquid interface for EF122B compared with EF122A within measured frequency window (0.125–1.25 Hz).     

Temporal variation of atmospheric polycyclic aromatic hydrocarbon concentrations in PM10 from the Kathmandu Valley and their gas-particle concentrations in winter

The concentrations of polycyclic aromatic hydrocarbons (PAHs) in particulate matter (PM) with a diameter <10 µm (PM₁₀, 50% cut off) were investigated in the Kathmandu Valley, Nepal, during 2003. In order to understand the dynamics of atmospheric PAHs in winter, the PAH concentrations in total PM and in the gaseous phase were investigated in the valley in December 2005. Total of 45 PAH compounds (∑45PAHs) were analysed by high-resolution gas chromatography/high-resolution mass spectrometry (HRGC/HRMS). In 2003, the ∑45PAH concentrations in PM₁₀ ranged between 4.3 and 89 ng m^?3 (annual average; 27 ± 24 ng m^?3). The average concentrations of ∑45PAHs in December 2005 were 210 ± 33 ng m^?3 in total PM and 430 ± 90 ng m^?3 in the gaseous phase. The ∑45PAH concentration in PM accounted for more than 30% of the sum of their particulate and gaseous forms. Phenanthrene (Ph) was the most predominant compound in the gaseous phase, whereas four- to seven-ring PAHs were predominant in total PM. The highest values of ∑45PAHs occurred in the winter and spring. Estimates of emission sources based on diagnostic molecular ratios showed that atmospheric PAHs in the Kathmandu Valley mainly originated from the exhaust gas of diesel engine. In the winter and spring, PAH pollution would be accelerated by the operations of brick kilns and the frequent formation of an atmospherically stable layer in the valley.     

Effect of pressure on electrical resistance of WSe<Subscript>2</Subscript> single crystal

The results of electrical resistance measurements under pressure on single crystals of WSe₂ are reported. Measurements up to 8.5 GPa are carried out using Bridgman anvil set up and beyond it using diamond anvil cell (DAC) up to a pressure of 27 GPa. There is no clear indication of any phase transition till the highest pressure is reached in these measurements.