C-Terminal properties are important for ring-fused 2-pyridones that interfere with the chaperone function in uropathogenic E. coli

Virulence-associated organelles, termed pili or fimbriae, are assembled via the highly conserved chaperone-usher pathway in a vast number of pathogenic bacteria. Substituted bicyclic 2-pyridones, pilicides, inhibit pilus formation, possibly by interfering with the active site residues Arg8 and Lys112 of chaperones in uropathogenic E. coli. In this article we describe the synthesis and evaluation of nine analogues of a biologically active pilicide. Derivatization was performed with respect to its C-terminal features and the affinities for the chaperone PapD were studied with 1H relaxation-edited NMR spectroscopy. It could be concluded that the carboxylic acid functionality and also its spatial location was important for binding. In all cases, binding was significantly reduced or even abolished when the carboxylic acid was replaced by other substituents. In addition, in vivo results from a hemagglutination assay are presented where the derivatives have been evaluated for their ability to inhibit pilus formation in uropathogenic E. coli.     

A low noise 0.9 GHz FBAR clock

A low noise 0.9 GHz FBAR clock consisting of an oscillator and divider circuit for single-sided-to-differential conversion for a high-speed interleaved pipeline A/D-converter was designed, realized with an in-house FBAR and a commercial 0.35 μm CMOS process, and tested. The circuit showed very good jitter and phase noise performance. A temperature coefficient of –47 ppm/K was measured.     

Compensation of non-reciprocal interference in adaptive MIMO-OFDM cellular systems

In a time-division-duplex communication system, the channel knowledge can be obtained at the transmitter side due to channel reciprocity and it can be used to increase the spectral efficiency of a multiple-input multiple-output (MIMO) communications. However, the interference structure between transmission directions does not necessarily correlate. The obtained quality of service at the receiver may differ significantly from the desired one if the transmission parameters are assigned based on the reverse link measurements only. In this paper, the performance of an orthogonal frequency division multiplexing (OFDM) cellular system with adaptive MIMO transmission is studied in the presence of non-reciprocal inter-cell interference when the downlink interference structure is known at the receiver and only limited feedback information about the interference is available at the transmitter. The results are compared to those with perfectly known interference structure per each sub-carrier. The system level impact of realistic interference non-reciprocity scenarios is studied via network simulations. Linear minimum mean squared error (MMSE) filter is applied at the receiver to suppress the impact of structured inter-cell interference together with a simple and bandwidth efficient closed-loop compensation algorithm. Both link and system level simulation results show that the proposed compensation algorithm with a simple scalar power offset feedback combined with interference suppression at the receiver results in nearly the same performance as the ideal case     

Thermoplastic Xylan Derivatives with Propylene Oxide

Polymeric xylan can be reacted with propylene oxide (PO) in aqueous alkali homogeneously. Since xylan is isolated from biomass in aqueous alkaline solution, an in-line modification with PO as part of the isolation protocol, is most practical. Hydroxypropyl xylan (HPX) is a low molecular weight, branched, water-soluble polysaccharide with low intrinsic viscosity and thermoplasticity. Following peracetylation of HPX in formamide solution, water-insoluble acetoxypropyl xylan (APX) is formed that is also thermoplastic but no longer water soluble. The glass transition temperature (T _g) of APX varies in relation to degree of substitution with hydroxypropyl groups (DS_PO), and this is found to decline from 160 to 70°C as DS_PO rises from 0.2 to 2.0. At a temperature above the T _g of HPX a molecular reorganization is noted, and a faint transition due to melting (T _m) is observed at 205°C. HPX thermally degrades with a weight loss maximum at 317°C, or approximately 60°C below that of a corresponding cellulose derivative. HPX forms clear films when solvent cast from aqueous solution. Films are higher in ultimate tensile strength and lower in toughness than corresponding cellulose derivative films. The properties of HPX and APX derivatives qualify this material as a potential biodegradable and thermoplastic additive to melt-processed plastics. Blend characteristics with polystyrene reveal a shear-thinning effect in melt and a plasticization effect in solid state.     

Fluorine-free organoxenon chemistry: HXeCCH,HXeCC, and HXeCCXeH

Three novel Xe-containing organic compounds, HXeCCH, HXeCC (open-shell species), and HXeCCXeH, are identified using infrared absorption spectroscopy. They are prepared in a low-temperature Xe matrix using UV photolysis of acetylene and subsequent annealing at 40-45 K. The experimental observations are supported by extensive ab initio calculations. This work demonstrates a new way to activate the H-Ctbd1;C- group without use of XeF(2), which can extend the range of organoxenon compounds.     

Negative gastrointestinal contrast enhancement and image distortion induced by superparamagnetic particles at 0.02 Tesla

Gastrointestinal contrast enhancement and image distortion induced by superparamagnetic particles were evaluated in vitro and in rabbits at 0.02 Tesla. Test tubes containing 0.01–1.0 mg particles/ml were imaged in an oil or water bath in order to demonstrate the concentration-dependent signal void and image distortion in vitro at several pulse sequences. The lowest concentration of particles tested clearly decreased the signal intensity. Image distortion was observed when the concentration exceeded 0.07 mg/ml and was more pronounced on the T₂-weighted images. The in vitro T₂ relaxation time decreased from 122 ms to 56 ms with an increase in the particle concentration from 0.01 to 0.06 mg/ml. A loss of the GI-tract signal was observed in rabbits after the administration of 1 mg particles/kg, given as a 0.03 mg/ml suspension. At a dose of 20 mg/kg (0.6 mg/ml suspension) significant image distortion was observed.     

NMR studies of interactions between periplasmic chaperones from uropathogenic E. coli and pilicides that interfere with chaperone function and pilus assembly

Adherence of uropathogenic Escherichia coli to host tissue is mediated by pili, which are hair-like protein structures extending from the outer cell membrane of the bacterium. The chaperones FimC and PapD are key components in pilus assembly since they catalyse folding of subunits that are incorporated in type 1 and P pili, respectively, and also transport the subunits across the periplasmic space. Recently, compounds that inhibit pilus biogenesis and interfere with chaperone-subunit interactions have been discovered and termed pilicides. In this paper NMR spectroscopy was used to study the interaction of different pilicides with PapD and FimC in order to gain structural knowledge that would explain the effect that some pilicides have on pilus assembly. First relaxation-edited NMR experiments revealed that the pilicides bound to the PapD chaperone with mM affinity. Then the pilicide-chaperone interaction surface was investigated through chemical shift mapping using 15N-labelled FimC. Principal component analysis performed on the chemical shift perturbation data revealed the presence of three binding sites on the surface of FimC, which interacted with three different classes of pilicides. Analysis of structure-activity relationships suggested that pilicides reduce pilus assembly in E. coli either by binding in the cleft of the chaperone, or by influencing the orientation of the flexible F1-G1 loop, both of which are part of the surface by which the chaperone forms complexes with pilus subunits. It is suggested that binding to either of these sites interferes with folding of the pilus subunits, which occurs during formation of the chaperone-subunit complexes. In addition, pilicides that influence the F1-G1 loop also appear to reduce pilus formation by their ability to dissociate chaperone-subunit complexes.     

Characterisation of organic compounds in aerosol particles from a Finnish forest by on-line coupled supercritical fluid extraction–liquid chromatography–gas chromatography–mass spectrometry

During the European Union project Quantification of Aerosol Nucleation in the European Boundary Layer (QUEST), which began in spring 2003, atmospheric aerosol particles were collected in a Finnish Scots pine forest using a high-volume sampler. The organic compounds in the filter samples were then analysed by on-line coupled supercritical fluid extraction–liquid chromatography–gas chromatography–mass spectrometry (SFE–LC–GC–MS). The sample was first extracted by SFE. During LC the extracts were fractionated into three fractions according to polarity. The final separation was carried out by GC–MS. A fraction volume as high as 840 L was transferred to the GC, using the partial concurrent eluent evaporation technique. The same instrumentation, with an in-situ SFE derivatisation method, was used to analyse organic acids. Major compounds such as n-alkanes and PAH were analysed quantitatively. Their concentrations were lower than those usually observed in urban areas or in other forest areas in Europe. The wind direction was one of the most important factors affecting changes in the daily concentrations of these compounds. Scots pine needles were analysed with the same system to obtain reference data for identification of biogenic compounds in aerosol particles. Other organic compounds found in this study included hopanes, steranes, n-alkanals, n-alkan-2-ones, oxy-PAH, and alkyl-PAH; some biogenic products, including oxidation products of monoterpenes, were also identified.     

Bounds for binary multiple covering codes

We study codes that are multiple coverings of the Hamming space and discuss lower and upper bounds onK(n, r, ), the minimum cardinality of a binary code of lengthn such that the Hamming spheres of radiusr centered at the codewords cover at least times. We also study the similar problem of multiple coverings containing repeated words. A table of bounds forn16,r4, 4 is given.     

Accretion Product Formation from Self‐ and Cross‐Reactions of RO2 Radicals in the Atmosphere

Hydrocarbons are emitted into the Earth's atmosphere in very large quantities by human and biogenic activities. Their atmospheric oxidation processes almost exclusively yield RO₂ radicals as reactive intermediates whose atmospheric fate is not yet fully unraveled. Herein, we show that gas‐phase reactions of two RO₂ radicals produce accretion products composed of the carbon backbone of both reactants. The rates for accretion product formation are very high for RO₂ radicals bearing functional groups, competing with those of the corresponding reactions with NO and HO₂. This pathway, which has not yet been considered in the modelling of atmospheric processes, can be important, or even dominant, for the fate of RO₂ radicals in all areas of the atmosphere. Moreover, the vapor pressure of the formed accretion products can be remarkably low, characterizing them as an effective source for the secondary organic aerosol.