An intramolecular benzyl rearrangement of 1-(N-benzyloxycarbonylamino)alkylphosphonate diesters under electrospray ionization conditions

The mass spectrometric behavior of eleven 1-(N-benzyloxycarbonyl(Cbz)amino)alkylphosphonate diesters was studied under positive ion electrospray ionization (ESI) conditions. Their fragmentation pathways are depicted and supported by tandem mass spectrometry. Besides the common eliminations of ether, benzyl alcohol, phosphite and an ether plus benzyl alcohol from molecular ions, the title compounds show a tendency to undergo an interesting intramolecular benzyl rearrangement to yield benzylphosphonate ions. The fragmentation patterns do not depend on the substituent attached to the alpha-carbon atom.     

Rapid separation and laser-induced fluorescence detection of mutated DNA by capillary electrophoresis in a self-coating, low-viscosity polymer matrix

The detection of point and other simple mutations in DNA is important for cancer research and diagnosis and other biological studies. Capillary electrophoresis has been successfully used for separating DNA fragments. However, a low-viscosity polymer sieving buffer for DNA separation with on-line coating has never been reported. In this paper, a new method using capillary electrophoresis with on-line coating and laser-induced fluorescence detection (CE-LIF) for screening for point or simple DNA mutations has been demonstrated. The method uses an on-line dynamic coating technique that increases capillary lifetime and analysis reproducibility, and employs a low-viscosity polymer solution, which allows the user to rinse the capillary rapidly and refill with polymer solution easily. Experiments proved that the additives in the separation buffer for on-line capillary coating do not affect the separation efficiency of the running buffer, and do not interfere with the formation of hydrogen-bonded network between boric acid, mannitol and hydroxypropylmethylcellulose polymers. The stability of the dynamically coated capillary was quantitatively studied; the capillary lifetime was increased 6- to 7-fold compared with that of permanently coated CE columns. Standard DNA fragments containing mutations, with sizes of 209, 219, and 338 bps, were successfully separated and detected with this system, after the mutated DNA fragments were cleaved by CEL-I endonuclease. The technique is very sensitive for the size-separation of low-range, middle-range, and high-range DNA fragments. Results were compared with the HPLC methods developed by Transgenomic, Inc. and were in good agreement. The method should be applicable to mutation detection for all relevant biological and clinical studies. The factors influencing separations and the stability of dynamic capillary coatings are also discussed in the paper.     

Microanalysis of nitro compounds. II

Summary A colorimetric method for the determination of phenolic compounds containing the nitro function is described. It is based on the production of a yellow color when nitrophenols are treated with iminobispropylamine in monochlorobenzene solution. There is no interference due to the presence of carbonyl and carboxyl groups in the molecule. Relationship between absorbance and concentration is linear in the range of 1 to 20g/ml for most nitrophenols. Isomeric compounds can be distinguished by the absorption spectra of their respective colored complexes.

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Zusammenfassung Ein kolorimetrisches Verfahren zur Bestimmung phenolischer Nitroverbindungen wurde beschrieben. Es beruht auf der gelben Farbreaktion der Nitrophenole mit Imino-bis-propylamin in monochlorbenzolischer Lösung. Carbonyl-und Carboxylgruppen stören nicht. Absorption und Konzentration verhalten sieh bei den meisten Nitrophenolen zwischen 1 und 20g/ml linear. Isomere Verbindungen können an dem Absorptionsspektrum ihrer gefärbten Komplexverbindungen unterschieden werden.

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Résumé On décrit une méthode colorimétrique pour le dosage des composés phénoliques contenant la fonction nitro. Elle est fondée sur la formation d'une coloration jaune quand les nitrophénols sont traités par l'imino-bispropylamine en solution dans le monochlorobenzene. Il n'y a pas d'interférence due à la présence de groupes carbonyles et carboxyles dans la molécule. La relation entre la densité optique et la concentration est linéaire dans le domaine de 1 à 20g/ml pour la plupart des nitrophénols. On peut distinguer les composés isomères par les spectres d'absorption de leurs complexes colorés respectifs.

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For Part I of this series, see ref. 7.     

Synthesis of giant rigid pi-conjugated dendrimers

A novel family of giant pi-conjugated dendrimers (G0, G1, and G2) solely constructed by 5,5,10,10,15,15-hexahexyltruxene units has been developed in a convergent manner through a Suzuki cross-coupling reaction. The overall yields to such large rigid conjugated dendrimers are quite satisfying. The structures and purity of these nanosize rigid dendrimers are verified by 1H and 13C NMR, MALDI-TOF MS, and elemental analysis.     

Synthesis of bicyclic pyrimidine derivatives as ATP analogues

A highly efficient and general solid-phase synthesis of bicyclic pyrimidine derivatives that target purine dependent proteins is reported. The synthesis of the key intermediate, 4,6-disubstituted-5-amino-pyrimidine, involved reduction of the corresponding nitro derivatives using 1,1'-dioctyl-viologen in a triphasic milieu. The mild reduction conditions enable the use of any acid labile solid support as well as a wide range of combinatorial substituents, thus enabling the synthesis of large libraries of highly diverse bicyclic pyrimidines. Alternative reduction conditions with tin(II) chloride and structure-reactivity studies are discussed as well.     

Determination of Kinetic Parameters of Phase Transition on the Basis of DTA Measurements

A simple method of determination of kinetic parameters by analysis of DTA(t) function was developed for the case of systems undergoing transitions without mass change and when kinetic equation describing transition rate is known. The presented method also permits the determination of transition rate dα/dt (or α(t )) when the kinetic equation of transition is unknown. The developed method was tested using DTA data of crystallization of 2CaO×Al₂ O₃ ×1.95SiO₂ glass pure and doped with Cr³⁺ and Nd³⁺ . This revised version was published online in July 2006 with corrections to the Cover Date.     

Cooperative and substitution effects in enhancing strengths of halogen bonds in FCl⋯CNX complexes

In this paper, the cooperative effect of halogen bond with hydrogen bond has been used to make a halogen bond in FCl-CNH dimer vary from a chlorine-shared one to an ion-pair one. The halogen bond is strengthened in FCl-CNH-CNH trimer and its maximal interaction energy equals to -76 kJ∕mol when the number of CNH in FCl-CNH-(CNH)(n) polymer approaches infinity. Once the free H atom in FCl-CNH-CNH trimer is replaced with alkali metals, the halogen bond becomes strong enough to be an ion-pair one in FCl-CNH-CNLi and FCl-CNH-CNNa trimers. An introduction of a Lewis acid in FCl-CNH dimer has a more prominent effect on the type of halogen bond. A prominent cooperative effect is found for the halogen bond and hydrogen bond in the trimers. FH-FCl-CNH-CNH and FH-FCl-CNH-CNLi tetramers have also been studied and the interaction energy of halogen bonding in FH-FCl-CNH-CNLi tetramer is about 12 times as much as that in the FCl-CNH dimer. The atoms in molecules and natural bond orbital analyses have been carried out for these complexes to understand the nature of halogen bond and the origin of the cooperativity.     

Novel bimetallic Cr<Subscript>3</Subscript>Yb<Subscript>3</Subscript> mixed salt containing a 3<Emphasis Type="Italic">d</Emphasis>-4<Emphasis Type="Italic">f</Emphasis> heterometallic Cr<Subscript>2</Subscript>Yb<Subscript>3</Subscript> cluster

A novel bimetallic Cr₃Yb₃ coordination compound containing a 3d-4f heterometallic Cr₂Yb₃ cationic cluster has been synthesized and structurally characterized. The crystal structure was determined by X-ray analysis. Results denote that the complex consists of an original [Cr ₂ ^III Yb ₃ ^III ]³⁺ moiety with a trigonal-bipyramidal topology of the [Cr₂Yb₃(μ-OOCCH₃)₆(μ-OH)₆(H₂O)₆]³⁺ core, an isolated [Cr^III(CN)₆]^3? anion, and four molecular neutral 4,4′-bipyridene (Bipy) ligands, namely, [Cr₂Yb₃(μ-OOCCH₃)₆(μ-OH)₆(H₂O)₆][Cr(CN)₆] · 4Bipy · 13H₂O.