Microwave-enhanced alpha-arylation of a protected glycine in water: evaluation of 3-phenylglycine derivatives as inhibitors of the tuberculosis enzyme, glutamine synthetase

A microwave-enhanced, palladium-catalyzed protocol for the alpha-arylation of a protected glycine in neat water is described. This reaction proceeds rapidly, under non-inert conditions, to afford a range of phenylglycine derivatives in moderate to good yields. Based on this alpha-arylation, a number of aryl L-methionine-SR-sulfoximine (MSO) analogues were prepared and evaluated for their Mycobacterium tuberculosis glutamine synthetase (TB-GS) inhibitory activity.     

Single-cell electroporation arrays with real-time monitoring and feedback control

Rapid well-controlled intracellular delivery of drug compounds, RNA, or DNA into a cell--without permanent damage to the cell--is a pervasive challenge in basic cell biology research, drug discovery, and gene delivery. To address this challenge, we have developed a bench-top system comprised of a control interface, that mates to disposable 96-well-formatted microfluidic devices, enabling the individual manipulation, electroporation and real-time monitoring of each cell in suspension. This is the first demonstrated real-time feedback-controlled electroporation of an array of single-cells. Our computer program automatically detects electroporation events and subsequently releases the electric field, precluding continued field-induced damage of the cell, to allow for membrane resealing. Using this novel set-up, we demonstrate the reliable electroporation of an array (n = 15) of individual cells in suspension, using low applied electric fields (<1 V) and the rapid and localized intracellular delivery of otherwise impermeable compounds (Calcein and Orange Green Dextran). Such multiplexed electrical and optical measurements as a function of time are not attainable with typical electroporation setups. This system, which mounts on an inverted microscope, obviates many issues typically associated with prototypical microfluidic chip setups and, more importantly, offers well-controlled and reproducible parallel pressure and electrical application to individual cells for repeatability.     

Self-organization of water in lithium/nitrobenzene system

The effect of lithium ion on the ordering of water in water-saturated nitrobenzene has been probed by 2H NMR, diffusion ordered spectroscopy and neutron scattering. It was shown that increased water concentration in LiClO4/wet nitrobenzene results in the formation of a metastable solvatomer with mixed water and nitrobenzene character, Li+(W/NB). This species is shown to decay over hours to two solvatomers, one dominated by nitrobenzene Li+(NB) and the other dominated by water Li+(W). To confirm the assignment of these solvation states, diffusion ordered deuterium NMR spectroscopy has been used to elucidate the hydrodynamic radii of these solvatomers. Neutron scattering yields vibrational spectroscopy information that shows how addition of lithium to the nitrobenzene/water system results in relatively slow self-organization of the water environment (hours).     

Alternative donor substrates for inverting and retaining glycosyltransferases

By the use of glycosyl donors containing aromatic leaving groups linked with opposite anomeric configurations compared to those of the natural donor substrates, an inverting (Cst II) and a retaining (LgtC) glycosyltransferase were found to catalyse glycosylation reactions of natural acceptor substrates in the presence of the corresponding nucleotide.     

Electrospray ionization/atmospheric pressure photoionization multimode source for low-flow liquid chromatography/mass spectrometric analysis

Analysis of several polar and non-polar compounds is performed with a newly developed dual electrospray ionization/atmospheric pressure photoionization (ESI/APPI) or ESPI source. Several variables are considered in the source, such as ESI probe heater temperature, solvent flow, dopant effects, repeller plate voltage, source geometry and photon energy (Kr vs. Ar lamp). Direct photoionization resulting in a molecular radical cation [M](*+) dominates at high temperatures (>400 degrees C) and low flow rates (<200 microL/min). Indirect photo-induced chemical ionization (PCI) involving solvent molecules becomes important at lower temperatures and higher solvent flow rates. Indirect PCI is enhanced using an Ar lamp, which yields comparable [M+H](+) signal but poorer [M](*+) signal than the Kr lamp at lower temperatures and higher flow rates. This is in support of our recent finding that the Ar lamp results in a solvent-dependent enhancement of analyte molecules via PCI. Analysis of 12 compounds in methanol under low-flow conditions (10 microL/min) demonstrates that the dual ESPI source performs favorably for most compounds versus the standard ESCI source, and significantly better than ESCI for the analysis of unstable drugs, like flurbiprofen. Several factors contributing to the benefits of the ESPI source are the shared optimal geometry for ESI and APPI sources and soft ionization of APPI versus APCI.     

A dual-porosity model for gas reservoir flow incorporating adsorption behaviour—part I. Theoretical development and asymptotic analyses

In this paper a rigorous dual-porosity model is formulated, which accurately represents the coupling between large-scale fractures and the micropores within dual porosity media. The overall structure of the porous medium is conceptualized as being blocks of diffusion dominated micropores separated by natural fractures (e.g. cleats for coal) through which Darcy’s flow occurs. In the developed model, diffusion in the matrix blocks is fully coupled to the pressure distribution within the fracture system. Specific assumptions on the pressure behaviour at the matrix boundary, such as step-time function employed in some earlier studies, are not invoked. The model involves introducing an analytical solution for diffusion within a matrix block, and the resultant combined flow equation is a nonlinear integro-(partial) differential equation. Analyses to the equation in this text, in addition to the theoretical development of the proposed model, include: (1) discussion on the “fading memory” of the model; (2); one-dimensional perturbation solution subject to a specific condition; and (3) asymptotic analyses of the “long-time” and “short-time” responses of the flow. Two previous models, the Warren-Root and the modified Vermeulen models, are compared with the proposed model. The advantages of the new model are demonstrated, particularly for early time prediction where the approximations of these other models can lead to significant error.