First-second shell interactions in metal binding sites in proteins: a PDB survey and DFT/CDM calculations

The role of the second shell in the process of metal binding and selectivity in metalloproteins has been elucidated by combining Protein Data Bank (PDB) surveys of Mg, Mn, Ca, and Zn binding sites with density functional theory/continuum dielectric methods (DFT/CDM). Peptide backbone groups were found to be the most common second-shell ligand in Mg, Mn, Ca, and Zn binding sites, followed (in decreasing order) by Asp/Glu, Lys/Arg, Asn/Gln, and Ser/Thr side chains. Aromatic oxygen- or nitrogen-containing side chains (Tyr, His, and Trp) and sulfur-containing side chains (Cys and Met) are seldom found in the second coordination layer. The backbone and Asn/Gln side chain are ubiquitous in the metal second coordination layer as their carbonyl oxygen and amide hydrogen can act as a hydrogen-bond acceptor and donor, respectively, and can therefore partner practically every first-shell ligand. The second most common outer-shell ligand, Asp/Glu, predominantly hydrogen bonds to a metal-bound water or Zn-bound histidine and polarizes the H-O or H-N bond. In certain cases, a second-shell Asp/Glu could affect the protonation state of the metal ligand. It could also energetically stabilize a positively charged metal complex more than a neutral ligand such as the backbone and Asn/Gln side chain. As for the first shell, the second shell is predicted to contribute to the metal selectivity of the binding site by discriminating between metal cations of different ionic radii and coordination geometries. The first-shell-second-shell interaction energies decay rapidly with increasing solvent exposure of the metal binding site. They are less favorable but are of the same order of magnitude as compared to the respective metal-first-shell interaction energies. Altogether, the results indicate that the structure and properties of the second shell are dictated by those of the first layer. The outer shell is apparently designed to stabilize/protect the inner-shell and complement/enhance its properties.     

二水草酸锌脱水的热分解动力学研究

提出一种多升温速率-等温法确定机理函数g(α)的新方法;并用迭代的等转化率法求出较为可靠的活化能Ea;在Ea和g(α)的基础上计算出指前因子A.用该法对二水草酸锌（ZnC2O4•2H2O）脱水反应的热分解动力学三因子进行了求算,得出Ea为87.22 kJ•mol－1, A为4.2120×108～7.2328×108 s－1;以及随机成核和随后生长型机理函数Am（Avrami-Erofeer）,其积分形式g(α)=[－ln(1－α)] 1/m和微分形式f(α)=m(1－α)•[－ln(1－α)](1－1/m),调节因子m=1.85～2.00.     

醋酸乙烯酯在硅橡胶上的辐射接枝研究

研究了不同溶剂中的醋酸乙烯酯在硅橡胶上的辐射接技状况及接枝后硅橡胶表面结构情况．结果表明：（１）在硅橡胶－乙酸乙酯－醋酸乙烯酯体系中，接枝有自加速效应；（２）适量加入对苯二酚，接枝诱导期延长，接枝速率下降，凝胶效应消失，辐射接技经验关联式为ＲＰ＝０．２７×［Ｄ］（－０．５６０）×［Ｉ］（０．４９０）×［Ｃ］（０．９２０），接核反应为扩散控制反应；（３）不同的溶剂对硅橡胶接枝有不同的影响，如甲醇发生敏化作用，提高接枝速率，而苯发生惰化作用，降低接枝速率；（４）在合适的甲醇和苯配比时，接枝反应几乎恒速进行，用扫描电镜（ＳＥＭ）观察断面，接枝区比较均一，出现微相分离．     

Development of high-temperature pulsed slit nozzle and its application to supersonic jet absorption spectrometry

A high-temperature pulsed slit nozzle, consisting of a circular pulsed nozzle and an interface to convert a circular flow into a slit flow has been constructed. The absorption spectrum is measured by scanning the wavelength of the monochromator equipped with a xenon arc lamp and by detecting the transmitted light through a jet with a photomultiplier. A rotationally cooled spectrum is clearly observed for aniline only when a long slit nozzle is employed. The absorptivity increases proportionally to the slit length at least up to 6 cm. The time for recording a spectrum is 3.5 min, which is reduced to several seconds by transmitting a white light through a jet and by measuring the spectrum with an optical multichannel analyzer. The detection limit is estimated to a partial vapor pressure of 0.4 torr for aniline. The present system can be conveniently used in routine analysis, because of a wide spectral coverage of the lamp source.     

On the Criteria of Instability for Electrochemical Systems

Both cyclic-voltammetry-based and impedance-based experimental criteria that have been developed recently for the oscillatory electrochemical systems are critically appraised with two typical categories of oscillators.Consistent conclusions can be drawn by the two criteria for the category of oscillators that involve the coupling of charge transfer mainly with surface steps(e.g.ad-and desorption)such as in the electrooxidation of C1 organic molecules.Whereas,impedance-based criterion is not applicable to the category of oscillators that involve the coupling of charge transfer mainly with mass transfer(e.g.diffusion and convection) such as in the Fe(CN)6^3- reduction accompanying periodic hydrogen evolution.The reason is that the negative impedance cannot include the feedback information of convection mass transfer induced by the hydrogen evolution.However,both positive and negative nonlinear feedbacks,i.e., the diffusion-limited depletion and convection-enhanced replenishment of the Fe(CN)6^3- surface concentration,that coexist between the bistability,i.e.,Fe(CN)6^3- reduction with and without hydrogen evolution at lower and higher potential sides respectively,are all reflected in the crossed cyclic voltammogram(CCV).It can be concluded that the voltammetry-based criterion(in time domain)is more intuitive,less time-consuming and has a wider range of applications than the impedancebased one (in frequency domain).     

Tasumatrols P – T,Five New Taxoids from Taxus sumatrana

The phytochemical investigation of the more polar fractions from the leaves and twigs of Taxus sumatrana (Taxaceae) afforded five new taxane diterpene esters, tasumatrols P–T ( 1 – 5 ) possessing an 11(15→1),11(10→9)‐diabeotaxane skeleton. Compounds 1, 4 , and 5 contain an α‐hydroxy group at C(14), while 3 has no OH group at either C(13) or C(14). Compound 2 is a natural 4,5‐acetonide derivative, while 4 has an unusual spiro‐connected 2‐hydroxy‐2‐phenyl‐1,3‐dioxolane ring. Ten known taxoids, were also isolated in the course of the chromatographic fractionation. Five additional new O‐acetyl derivatives 3a, 4a, 4b, 5a , and 5b were prepared from the taxanes 3 – 5 . The structures of all new compounds were established on the basis of their spectroscopic analyses. Compound 1 showed mild cytotoxic activity against human Hela and Daoy tumor cells.     

p-aminophenyl phosphate: an improved substrate for electrochemical enzyme immnoassay

An alternative substrate is described for enzyme immunosaasay with electrochemical detection. Alkaline phosphatase (EC.3.1.3.1) activity is determined by using p-aminophenyl phosphate as the enzyme substrate. Enzyme-generated p-aminophenol is detected amperometrically at a glassy carbon electrody by liquid chromatography with electrochemical detection. The oxidation potential obtained for the detectionof p-aminophenol is lower than that for phenol, the previously used substrate product. The detection limit for p-aminophenol is 0.20pmol. A detection limit of 30 pg ml^-1 for digoxin and a 5-min incubationtime for the enzyme reaction were obtained with the new system.     

Precise and accurate determination of the stoichiometry of CuInS2 semiconductor material by electrochemical methods

Summary CuInS₂ is one of the important I–III–VI₂ ternary compounds which has in recent years received increasing interest in semiconductor science. In this study an electrochemical method has been developed based on a limited amount of available sample (0.5–10mg) for the precise and accurate determination of CuInS₂ composition. After decomposition of the sample in concentrated HNO₃ under pressure, copper and indium were sequentially determined by constant potential coulometry, and sulfur (as sulfate) by amperometric titration. Various experimental parameters which ensure high precision and accuracy of the results were carefully evaluated and calibrated. The overall errors for the determination of copper, indium and sulfur in a 10 mg sample were found to be +0.10%, –0.12% and +0.16%, respectively, which fullfills the requirement for accurate stoichiometric assessment.

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Reproduzierbare und genaue Bestimmung der Stöchiometrie von CuInS₂-Halbleitermaterial mit Hilfe elektrochemischer Verfahren

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Presented at the 10th International Symposium on Microchemical Techniques, August 25–29, 1986, Antwerp, Belgium     

Study of quasi-monodisperse In2O3 nanocrystals: synthesis and optical determination

In this communication, we report a successful synthesis of quasi-monodisperse In2O3 nanocrystals with high crystallinity in a high-temperature organic solution. The average size of nanocrystals can be tuned using a dynamic injection technique. TEM and XRD investigations indicate that each nanocrystal is a single crystal. The optical determination implies that the photoluminescence behavior of these In2O3 nanocrystals is different from that of the bulk, probably due to the combination of weak quantum-confinement-effects and the nature of high crystallinity in nanocrystals.     

Mathematical Correction for Polyatomic Isobaric Spectral Interferences in Determination of Lanthanides by Inductively Coupled Plasma Mass Spectrometry

The determination of lanthanides by Inductively Coupled Plasma Mass Spectrometry (ICP‐MS) is complicated by several spectral overlaps from M⁺, MO⁺ or MOH⁺ ions formed in the ICP. Especially, it is essential to avoid the spectral interferences from lighter lanthanide and Ba polyatomic ions on middle or heavier lanthanides. To tackle this problem, we have developed a mathematical correction method, which reduces all the spectral overlaps from oxide species of Pr, Nd, Ce and Sm over Gd, Tb, Dy and Ho, and Gd, Tb over Yb and Lu. It can also successfully correct the oxide and hydroxide interference of Ba over Eu. The effectiveness of the proposed the mathematical correction scheme is demonstrated for the USGS Standard Rock samples AGV‐1 and G‐2. The results show that the experimental data obtained by applying the mathematical correction scheme for lanthanides is in good agreement with the reported values, using pneumatic and ultrasonic nebulisation methods, for their ICP‐MS analysis.