The permeation liquid membrane as a sensor for free nickel in aqueous samples

There are currently a limited number of techniques to study nickel speciation in aqueous samples. This work reports on the use of the permeation liquid membrane (PLM) for that objective. In this paper, the composition of the organic phase was studied to maximize the Ni flux (thus the sensitivity of the device) over a wide Ni2+ concentration range (50 nM to 100 microM) in order to verify its ability to determine free Ni2+ in the presence of Ni complexes. A mixture containing 1,10-didecyl-1,10-diaza-18-crown-6 ether (22DD) and di(2-ethylhexyl)phosphoric acid (D2EHPA) in toluene/phenylhexane was selected as the optimized organic phase for the PLM. The PLM was shown to be a reliable tool to measure free nickel concentrations down to 10(-7) M. The effect of pH on Ni transport was also studied. Fluxes below pH 6 were reduced significantly, i.e. an order of magnitude smaller than fluxes above pH 7.8. Finally, as part of a broader study examining the ability of trace metals to induce antibiotic resistance in bacteria, we used the PLM to quantify the formation, at pH = 7.2, of a weak complex between Ni and Imipenem (a member of the carbapenem class of beta-lactam antibiotics) or its hydrolysis product(s).     

Response normalized liquid chromatography nanospray ionization mass spectrometry

The widely different LC-MS response observed for many structurally different compounds limits the use of LC-MS in full scan detection mode for quantitative determination of drugs and metabolites without using reference standard. The recently introduced nanospray ionization (NSI) technique shows comparable MS response for some compounds under non-LC-MS conditions. However, in the presence of numerous endogenous compounds commonly associated with biological samples such as urine, plasma, and bile, LC-MS is required to separate, detect, identify, and measure individual analytes. An LC-NSI-MS system was devised and the MS response obtained in this system for a variety of pharmaceutical drugs and their metabolites. The set-up involves two high-performance liquid chromatography (HPLC) systems, a chip-based NSI source and a quadrupole-time-of-flight (Q-TOF) mass spectrometer. Herein this is referred to as the response normalized-liquid chromatography NSI-MS (RNLC-NSI-MS) system. One HPLC unit performs the analytical separation, while the other unit adds solvent post-column with an exact reverse of the mobile phase composition such that the final composition entering the NSI source is isocratic throughout the entire HPLC run. The data obtained from four different structural classes of compounds [vicriviroc (VCV), desloratadine (DL), tolbutamide, and cocaine] and their metabolites indicate that by maintaining the solvent composition unchanged across the HPLC run, the influence of the solvent environment on the ionization efficiency is minimized. In comparison to responses obtained from radiochromatograms, responses from conventional LC-ESI-MS overestimated the VCV and DL responses, respectively, by 6- and 20-fold. Although VCV and DL responses obtained using LC-NSI-MS are within 2- to 6-fold from the respective radiochromatographic responses, the response normalization modification results in nearly uniform LC-NSI-MS response for all compounds evaluated.     

Monitoring copopulated conformational states during protein folding events using electrospray ionization-ion mobility spectrometry-mass spectrometry

The precise mechanism of protein folding remains elusive and there is a deficiency of biophysical techniques that are capable of monitoring the individual behavior of copopulated protein conformers during the folding process. Herein, an ion mobility spectrometry (IMS) device integrated with electrospray ionization mass spectrometry (ESI-MS) has been used to successfully separate and analyze protein conformers differing in cross section and/or charge state. In an initial test, an ensemble of folded and partially folded conformers of the protein cytochrome c was separated. A detailed study undertaken on the amyloidogenic protein beta(2)-microglobulin (beta(2)m), which forms fibrils by protein unfolding followed by self-aggregation and is responsible for the disease dialysis-related amyloidosis, has generated important insights into its folding landscape. Initially, a systematic titration of beta(2)m over the pH range 2 to 7 using ESI-IMS-MS allowed individual conformers to be monitored and quantified throughout the acid denaturation process. Furthermore, a comparison of wild-type beta(2)m with single and double amino acid variants with a range of folding stabilities and propensities for amyloid fibril formation has provided illuminating evidence of the role of different conformers in protein stability and amyloidogenic aggregation. The ESI-IMS-MS data presented here not only demonstrate an important and informative further dimension to ESI-MS, but also illustrate the potential of the ESI-IMS-MS technique for unravelling protein folding enigmas in general and studying protein misfolding diseases in particular.     

Alkyl-CoA disulfides as inhibitors and mechanistic probes for FabH enzymes

The first step of the reaction catalyzed by the homodimeric FabH from a dissociated fatty acid synthase is acyl transfer from acyl-CoA to an active site cysteine. We report that C1 to C10 alkyl-CoA disulfides irreversibly inhibit Escherichia coli FabH (ecFabH) and Mycobacterium tuberculosis FabH with relative efficiencies that reflect these enzymes' differential acyl-group specificity. Crystallographic and kinetic studies with MeSSCoA show rapid inhibition of one monomer of ecFabH through formation of a methyl disulfide conjugate with this cysteine. Reaction of the second subunit with either MeSSCoA or acetyl-CoA is much slower. In the presence of malonyl-ACP, the acylation rate of the second subunit is restored to that of the native ecFabH. These observations suggest a catalytic model in which a structurally disordered apo-ecFabH dimer orders on binding either the first substrate, acetyl-CoA, or the inhibitor MeSSCoA, and is restored to a disordered state on binding of malonyl-ACP.     

Assessment of density functional theory methods for the computation of heats of formation and ionization potentials of systems containing third row transition metals

The performance of several different density functional theory (DFT) methods, including GGA, hybrid-GGA, meta-GGA, and hybrid-meta-GGA methods, have been assessed in terms of their ability to accurately compute both heats of formation and ionization potentials of systems containing third row transition metals. Two different basis sets were used in this study: 6-31G** and TZVP. It is found that the triple-zeta quality TZVP basis set generally produces the best results for both heats of formation and ionization potentials. One important observation made in this study is that the inclusion of exact exchange terms in DFT methods generally results in more consistently accurate results for both heats of formation and ionization potentials of transition metal systems. In general, DFT methods do not yield good ionization potential results for systems containing titanium or zinc. For heats of formation, it is found that the hybrid-meta-GGA functional, TPSS1KCIS, yields the best overall results when combined with the TZVP basis set, while PBE1PBE (hybrid-GGA) gives the best results for the 6-31G** basis. The hybrid-GGA functional, B3LYP, is found to produce the lowest overall errors for ionization potentials when combined with both 6-31G** and TZVP.     

Reliable predictions of the thermochemistry of boron-nitrogen hydrogen storage compounds: BxNxHy, x = 2, 3

Thermochemical data calculated using ab initio molecular orbital theory are reported for 16 BxNxHy compounds with x = 2, 3 and y > or = 2x. Accurate gas-phase heats of formation were obtained using coupled cluster with single and double excitations and perturbative triples (CCSD(T)) valence electron calculations extrapolated to the complete basis set (CBS) limit with additional corrections including core/valence, scalar relativistic, and spin-orbit corrections to predict the atomization energies and scaled harmonic frequencies to correct for zero point and thermal energies and estimate entropies. Computationally cheaper calculations were also performed using the G3MP2 and G3B3 variants of the Gaussian 03 method, as well as density functional theory (DFT) using the B3LYP functional. The G3MP2 heats of formation are too positive by up to approximately 6 kcal/mol as compared with CCSD(T)/CBS values. The more expensive G3B3 method predicts heats of formation that are too negative as compared with the CCSD(T)/CBS values by up to 3-4 kcal/mol. DFT using the B3LYP functional and 6-311+G** basis set predict isodesmic reaction energies to within a few kcal/mol compared with the CCSD(T)/CBS method so isodesmic reactions involving BN compounds and the analogous hydrocarbons can be used to estimate heats of formation. Heats of formation of c-B3N3H12 and c-B3N3H6 are -95.5 and -115.5 kcal/mol at 298 K, respectively, using our best calculated CCSD(T)/CBS approach. The experimental value for c-B3N3H6 appears to be approximately 7 kcal/mol too negative. Enthalpies, entropies, and free energies are calculated for many dehydrocoupling and dehydrogenation reactions that convert BNH6 to alicyclic and cyclic oligomers and H2(g). Generally, the reactions are highly exothermic and exergonic as well because of the release of 1 or more equivalents of H2(g). For c-B3N3H12 and c-B3N3H6, available experimental data for sublimation and vaporization lead to estimates of their condensed phase 298 K heats of formation: DeltaHf degrees [c-B3N3H12(s)] = -124 kcal/mol and DeltaHf degrees [c-B3N3H6(l)] = -123 kcal/mol. The reaction thermochemistries for the dehydrocoupling of BNH6(s) to c-B3N3H12(s) and the dehydrogenation of c-B3N3H12(s) to c-B3N3H6(l) are much less exothermic compared with the gas-phase reactions due to intermolecular forces which decrease in the order BNH6 > cyclo-B3N3H12 > cyclo-B3N3H6. The condensed phase reaction free energies are less negative compared with the gas-phase reactions but are still too favorable for BNH6 to be regenerated from either c-B3N3H12 or c-B3N3H6 by just an overpressure of H2.     

Nucleation of bulk phases in the HCl/H2O system

We report experimental results on the low-temperature uptake of HCl on H(2)O ice (ice). HCl was deposited on the surface at greater than monolayer amounts at 85 K, and the ice substrate was heated. The temperature dependence of the HCl vapor pressure from this phase was measured from 110 to 150 K, with the nucleation of a bulk hydrate phase observed at 150 K. Measurements were conducted in a closed system by simultaneous application of gas phase mass spectrometry and surface spectroscopy to characterize vapor/solid equilibrium and the nucleation of bulk hydrate phases. Combining the nucleation data reported here with data we reported previously (180 to 200 K) and data from two other laboratories (165 and 170 K), the thermodynamic boundaries for the nucleation of both the metastable bulk solution and bulk hydrate phases subsequent to monolayer adsorption of HCl have been determined. The nucleation of the metastable bulk solution phase occurs promptly at monolayer coverage at the ice/liquid coexistence boundary on the binary bulk phase diagram. The nucleation of the bulk hexahydrate occurs from this metastable solution along a locus of points defining a state of constant solution free energy. This measured free energy is -51.2 +/- 0.9 kJ/mol. Finally, the temperature dependence of the HCl vapor pressure from the low-temperature phase is reported here for the first time and is consistent with that of the metastable solution predicted by this thermodynamic model of uptake, extending the range of validity of this model of adsorption followed by bulk solution and hydrate nucleation to a lower bound in temperature of 110 K.