Molecular dynamics of a biodegradable biomimetic ionomer studied by broadband dielectric spectroscopy

Broadband dielectric spectroscopy was used to investigate the bulk molecular dynamics of a recently developed biodegradable biomimetic ionomer potentially useful for biomedical applications. Isothermal dielectric spectra were gathered for a phosphoryl choline (PC)-functionalized poly(trimethylene carbonate) (PTMC) ionomer and unfunctionalized PTMC at temperatures ranging from 2 to 60 degrees C over a broad frequency range of 10(-3) to 10(6) Hz. Four relaxations were clearly identified, two of which were shown to stem from the PTMC polymer backbone. A detailed analysis showed that the formation of zwitterionic aggregates was responsible for the material's bulk functionality and that bulk conduction processes may provide useful information for assessing the PC ionomer as a candidate for drug delivery applications. Finally, it was concluded that absorbed water concentrates around the aggregates, resulting in an increased mobility of the PC end-groups.     

General synthesis route to benanomicin-pradimicin antibiotics

A general approach to the regio- and stereoselective total synthesis of the benanomicin-pradimicin antibiotics (BpAs) is described. Construction of the aglycon has been achieved by 1) the diastereoselective ring-opening of a biaryl lactone by using (R)-valinol as a chiral nucleophile and 2) the stereocontrolled semi-pinacol cyclization of the aldehyde acetal by using SmI(2) in the presence of BF(3)OEt(2) and a proton source to afford the ABCD tetracyclic monoprotected diol. This strategy enabled us to control the two stereogenic sites in the B ring (C-5 and C-6) and the regioselective introduction of the carbohydrate moiety. The ABCD tetracycle could serve as an ideal platform for the divergent access to various BpAs. The amino acid (D-alanine) was introduced onto the ABCD tetracycle. Glycosylation was promoted by the combination of Cp(2)HfCl(2) and AgOTf (1:2 ratio). Construction of the E ring followed by deprotection completed the first total synthesis of benanomicin A (2 a), benanomicin B (2 b), and pradimicin A (1 a). The route is flexible enough to allow the synthesis of other congeners differing in their amino acid and carbohydrate moieties.     

Isolation of 6,13-dipropylpentacene and its tautomerization

6,13-Dipropyl-5,14-dihydropentacene was aromatized by the combination of the formation of pentacene-DDQ adduct and abstraction of DDQ from the pentacene-DDQ adduct with 50 equiv of gamma-terpinene to give 6,13-dipropylpentacene cleanly. It was stable and isolable. In the presence of a catalytic amount of acid, 6,13-dipropylpentacene was isomerized to its tautomer.     

Ruthenium-catalyzed reactions of 1-cyclopropyl-2-propyn-1-ols with anilines and water via allenylidene intermediates: selective preparation of tri- and tetrasubstituted conjugated enynes

Ruthenium-catalyzed efficient preparation of the conjugated enynes can be carried out in the reactions of 1-cyclopropyl-2-propyn-1-ols with nitrogen- and oxygen-centered nucleophiles such as anilines and water in the presence of a catalytic amount of sulfur-bridged diruthenium complexes. The use of such complexes as catalysts realizes the completely stereoselective preparation of tri- and tetrasubstituted conjugated enynes, where ruthenium-allenylidene complexes work as key intermediates. The direct attack of nucleophiles on a cyclopropane ring connected to an allenylidene ligand is a key step to obtain the enynes stereoselectively.     

Cyclization cascade of allenyl azides: a dual mechanism

A density functional theory based computational approach to describing the mechanistic course of the allene azide cycloaddition cascade sequence has been developed. The results of these calculations permit characterization of key reactive intermediates (diradicals and/or indolidenes) and explain the different behaviors observed in the experimental studies between conjugated and nonconjugated species. Furthermore, computational analysis of certain intermediates offer insight into issues of regioselectivity and stereoselectivity in cases where different reaction channels are in competition, suggesting suitable substitutions to achieve a single regioisomer in the indole synthesis via azide-allene cyclization.     

Simple and effective 3D recognition of domoic acid using a molecularly imprinted polymer

We have developed a simple and effective molecular imprinting technique to target compounds with flexible structure. Domoic acid (DA), an amnesic shellfish poison, was used as the target compound while many acidic compounds (mono-, di-, and tricarboxylic acids) were used as template molecules for molecularly imprinted polymers (MIPs). Evaluation of selective recognition abilities using liquid chromatography revealed that the highest selective recognition ability for DA was found when pentane-1,3,5-tricarboxylic acid (1,3,5-PeTA) was used as the template. Computer modeling studies of the DA structure suggested that the observed selective recognition depended on the structural changes in DA at the recognition site of the MIPs as well as spatial distance between the COOH groups in DA and 1,3,5-PeTA. Using the 1,3,5-PeTA-MIP, we could easily purify DA from blue mussel extracts by solid-phase extraction.     

High sequence-coverage detection of proteolytic peptides using a bis(terpyridine)ruthenium(II) complex

The use of a bis(terpyridine)ruthenium(ii) complex for peptide labeling (Ru-CO labeling) supplied high intensity peaks in mass spectrometry (MS) analysis that overcame the contribution of protonation or sodiated adduction to peptides. Ru-CO-labeled insulin A- and B-chains were detected simultaneously in comparable peak abundance by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). The mass spectra of chymotryptic peptide fragments of Ru-CO-labeled insulin also simultaneously indicated both N-terminal fragment ions, and amino acid sequences were determined easily by matrix-assisted laser desorption/ionization post-source-decay (MALDI-PSD). The sensitivity of detecting Ru-CO-labeled peptide fragment ions was not dependent on the length or the sequences of the peptides. The Ru-CO labeling method was applied to tryptic myoglobin fragments. The method indicated that each fragment ion is detected nearly equal in abundance and enabled the desired fragment ions to be distinguished from matrix clusters or their in-source fragments in lower mass regions. The desired fragment ions can be found in the mass region higher than 670.70 (= Ru-CO). This method provided a high sequence coverage (96%) by peptide mass fingerprinting (PMF). Application of this method to a protein mixture (myoglobin, lysozyme and ubiquitin) successfully achieved high sequence-coverage characterization (>90%) of these proteins simultaneously.     

Catalytic [2+2+2] and thermal [4+2] cycloaddition of 1,2-bis(arylpropiolyl)benzenes

We have determined that a cationic rhodium(I)/Segphos complex catalyzes an enantio- and diastereoselective intermolecular [2+2+2] cycloaddition of 1,2-bis(arylpropiolyl)benzenes with various monoalkynes at room temperature to give axially chiral 1,4-teraryls possessing an anthraquinone structure in good yields with good enantio- and diastereoselectivities. We have also determined that a thermal intramolecular [4+2] cycloaddition of 1,2-bis(arylpropiolyl)benzenes proceeds at 60 degrees C to give aryl-substituted naphthacenediones in moderate to good yields.     

Electron transfer from the S1 and S2 states of pentacoordinated tetrapyrrole macrocycles to pyromellitic diimide as an axial ligand

Electron transfer (ET) reactions from the S(1) and S(2) states of some porphyrins and phthalocyanines to the axial ligand have been investigated by means of femtosecond laser flash photolysis. As the axial ligand, which acts as an acceptor, we synthesized an asymmetric pyromellitic diimide (PI) compound that has an alkyl chain and a pyridine ring on N and N' atoms, respectively. The pyridine ring of PI can coordinate to Zn of tetrapyrrole macrocycles. The coordination was confirmed by UV-vis and (1)H NMR spectra. ET from the S(1) state of Zn tetraphenylporphyrin (ZnTPP), Zn octaethylporphyrin (ZnOEP), Zn phthalocyanine (ZnPc), and Zn naphthalocyanine (ZnNc) to PI was confirmed with transient absorption spectroscopy by observing PI*-. ET from the S1 state occurred at the rate constant of (8.6 ps)(-1) - (78 ps)(-1), and the yield was almost unity. Furthermore, ET from the S(2) state of ZnTPP and ZnPc to PI was confirmed. ET from the S(2) state of ZnPc was observed for the first time. The ET rate from the S(2) state was faster than that from the S(1) state. In the case of ZnOEP-PI and ZnNc-PI complexes, ET from the S(2) state was not observed.