Functional Organic Semiconductors Assembled via Natural Aggregating Peptides

Specific peptide sequences designed by inspection of protein–protein interfaces have been identified and used as tectons in hybrid functional materials. Here, an 8‐mer peptide derived from an interface of the peroxiredoxin family of self‐assembling proteins is exploited to encode the assembly of the perylene imide‐based organic semiconductor building blocks. By augmenting the peptide with additional functionality to trigger aggregation and manipulate the directionality of peptide‐semiconductor coupling, a series of hybrid materials based on the natural peptide interface is presented. Using spectroscopic probes, the mode of self‐assembly and the electronic coupling between neighboring perylene units is shown to be strongly affected by the number of peptides attached, and by their backbone directionality. The disubstituted material with peptides extending in the N to C direction away from the perylene core exhibits strong coupling and long‐range order, both attractive properties for electronic device applications. A bio‐organic field‐effect transistor is fabricated using this material, highlighting the possibilities of exploiting natural peptide tectons to encode self‐assembly in other functional materials and devices.     

Spectral tuning of shortwave-sensitive visual pigments in vertebrates

Of the four classes of vertebrate cone visual pigments, the shortwave-sensitive SWS1 class shows some of the largest shifts in lambda(max), with values ranging in different species from 390-435 nm in the violet region of the spectrum to < 360 nm in the ultraviolet. Phylogenetic evidence indicates that the ancestral pigment most probably had a lambda(max) in the UV and that shifts between violet and UV have occurred many times during evolution. In violet-sensitive (VS) pigments, the Schiff base is protonated whereas in UV-sensitive (UVS) pigments, it is almost certainly unprotonated. The generation of VS pigments in amphibia, birds and mammals from ancestral UVS pigments must involve therefore the stabilization of protonation. Similarly, stabilization must be lost in the evolution of avian UVS pigments from a VS ancestral pigment. The key residues in the opsin protein for these shifts are at sites 86 and 90, both adjacent to the Schiff base and the counterion at Glu113. In this review, the various molecular mechanisms for the UV and violet shifts in the different vertebrate groups are presented and the changes in the opsin protein that are responsible for the spectral shifts are discussed in the context of the structural model of bovine rhodopsin.     

Bacterial characterization using protein profiling in a microchip separations platform

A rapid microanalytical protein-based approach to bacterial characterization is presented. Chip gel electrophoresis (CGE) coupled with LIF detection was used to analyze lysates from different bacterial cell lines to obtain signature profiles of the soluble protein composition. The study includes Escherichia coli, Bacillus subtilis, and Bacillus anthracis (Delta Sterne strain) vegetative cells as well as endospores formed from the latter two species as model organisms to demonstrate the method. A unified protein preparation protocol was developed for both cell types to streamline the benchtop process and aid future automation. Cells and spores were lysed and proteins solubilized using a combination of thermal and chemical lysis methods. Reducing agents, necessary to solubilize spore proteins, were eliminated using a small-scale rapid size-exclusion chromatography step to eliminate interference with down-stream protein labeling. This approach was found to be compatible with nonspore cells (i.e., vegetative cells) as well, not adversely impacting the protein signatures. Data are presented demonstrating distinct CGE protein signatures for our model organisms, suggesting the potential for discrimination of organisms on the basis of empirical protein patterns. The goal of this work is to develop a fast and field-portable method for characterizing bacteria via their proteomes.     

Professional Development Strategically Connecting Mathematics and Science: The Impact on Teachers' Confidence and Practice

The press to integrate mathematics and science comes from researchers, business leaders, and educators, yet research that examines ways to support teachers in relating these disciplines is scant. Using research on science and mathematics professional development, we designed a professional development project to help elementary teachers improve their teaching of mathematics and science by strategically connecting these disciplines. The purposes of this study are: (a) to identify changes in teachers' confidence and practice after participating in the professional development and (b) to identify different ways to connect mathematics and science during the professional development. We use a Likert‐scale survey to assess changes in teachers' confidence related to teaching mathematics and science. In addition, we report on a thematic analysis of teachers' written responses to open‐ended questions that probed teachers' perceived changes in practice. We analyze field notes from observations of project workshops to document different types of opportunities for connecting mathematics and science. We conclude with implications for future professional development that connects mathematics and science in meaningful ways, as well as suggestions for future research.     

Microchip-based immunomagnetic detection of circulating tumor cells

Screening for circulating tumor cells (CTCs) in blood has been an object of interest for evidence of progressive disease, status of disease activity, recognition of clonal evolution of molecular changes and for possible early diagnosis of cancer. We describe a new method of microchip-based immunomagnetic CTC detection, in which the benefits of both immunomagnetic assay and the microfluidic device are combined. As the blood sample flows through the microchannel closely above arrayed magnets, cancer cells labeled with magnetic nanoparticles are separated from blood flow and deposited at the bottom wall of the glass coverslip, which allows direct observation of captured cells with a fluorescence microscope. A polydimethylsiloxane (PDMS)-based microchannel fixed on a glass coverslip was used to screen blood samples. The thin, flat dimensions of the microchannel, combined with the sharp magnetic field gradient in the vicinity of arrayed magnets with alternate polarities, lead to an effective capture of labeled cells. Compared to the commercially available CellSearch? system, fewer (25%) magnetic particles are required to achieve a comparable capture rate, while the screening speed (at an optimal blood flow rate of 10 mL h(-1)) is more than five times faster than those reported previously with a microchannel-based assay. For the screening experiment, blood drawn from healthy subjects into CellSave? tubes was spiked with cultured cancer cell lines of COLO205 and SKBR3. The blood was then kept at room temperature for 48 hours before the screening, emulating the actual clinical cases of blood screening. Customized Fe(3)O(4) magnetic nanoparticles (Veridex Ferrofluid?) conjugated to anti-epithelial cell adhesion molecule (EpCAM) antibodies were introduced into the blood samples to label cancer cells, and the blood was then run through the microchip device to capture the labelled cells. After capture, the cells were stained with fluorescent labelled anti-cytokeratin, DAPI and anti-CD45. Subsequent immunofluorescence images were taken for the captured cells, followed by comprehensive computer aided analysis based on fluorescence intensities and cell morphology. Rare cancer cells (from ～1000 cells down to ～5 cells per mL) with very low tumor cell to blood cell ratios (about 1?:?10(7) to 10(9), including red blood cells) were successfully detected. Cancer cell capture rates of 90% and 86% were demonstrated for COLO205 and SKBR3 cells, respectively.     

MSMBuilder2: Modeling Conformational Dynamics at the Picosecond to Millisecond Scale

Markov State Models provide a framework for understanding the fundamental states and rates in the conformational dynamics of biomolecules. We describe an improved protocol for constructing Markov State Models from molecular dynamics simulations. The new protocol includes advances in clustering, data preparation, and model estimation; these improvements lead to significant increases in model accuracy, as assessed by the ability to recapitulate equilibrium and kinetic properties of reference systems. A high-performance implementation of this protocol, provided in MSMBuilder2, is validated on dynamics ranging from picoseconds to milliseconds.     

Skin: the ultimate interface

The outer layer of the skin, the stratum corneum is a unique barrier membrane. On average it is only 20 μm thick (about a quarter the thickness of a normal sheet of paper) but it prevents us from losing excessive water and it protects us from our environment. It forms a special interface between our body, the air, water and various solids. In order to understand the barrier properties of the skin we need to determine its structure at various levels ranging from the macroscopic scale to the molecular level. This has been made easier by the advances that there have been over the recent decade. However, the amount of a material that is capable of penetrating this excellent barrier and reaching the underlying systemic circulation is still only of the order of 1 or 2 per cent of the total applied dose. The purpose of this publication is to explore the strategies currently employed to promote skin permeation and to consider the most exciting approaches currently under investigation. The limitations of current methodology to examine the problem are discussed. New opportunities to fill the gaps in our current knowledge are identified and the importance of interdisciplinary research in the field is emphasised.     

Parylene insulated probes for scanning electrochemical-atomic force microscopy

Scanning electrochemical-atomic force microscopy (SECM-AFM) is a powerful technique that can be used to obtain in situ information related to electrochemical phenomena at interfaces. Fabrication of probes to perform SECM-AFM experiments remains a challenge. Herein, we describe a method for formation of microelectrodes at the tip of commercial conductive AFM probes and demonstrate application of these probes to SECM-AFM. Probes were first insulated with a thin parylene layer, followed by subsequent exposure of active electrodes at the probe tips by mechanical abrasion of the insulating layer. Characterization of probes was performed by electron microscopy and cyclic voltammetry. In situ measurement of localized electrochemical activity with parylene-coated probes was demonstrated through measurement of the diffusion of Ru(NH)(6)(3+) across a porous membrane.     

Precision measurement of neutrino oscillation parameters with KamLAND

The KamLAND experiment has determined a precise value for the neutrino oscillation parameter Deltam21(2) and stringent constraints on theta12. The exposure to nuclear reactor antineutrinos is increased almost fourfold over previous results to 2.44 x 10(32) proton yr due to longer livetime and an enlarged fiducial volume. An undistorted reactor nu[over]e energy spectrum is now rejected at >5sigma. Analysis of the reactor spectrum above the inverse beta decay energy threshold, and including geoneutrinos, gives a best fit at Deltam21(2)=7.58(-0.13)(+0.14)(stat) -0.15+0.15(syst) x 10(-5) eV2 and tan2theta12=0.56(-0.07)+0.10(stat) -0.06+0.10(syst). Local Deltachi2 minima at higher and lower Deltam21(2) are disfavored at >4sigma. Combining with solar neutrino data, we obtain Deltam21(2)=7.59(-0.21)+0.21 x 10(-5) eV2 and tan2theta12=0.47(-0.05)+0.06.     

On the character of three 8+ states in 192Pb

Three low-lying 8⁺ states have been identified in ¹⁹²Pb . A newly observed cascade of $ \gamma$ -rays built directly on the 8⁺ ₁ state is compared to the previously identified, weakly rotational band above the 11^- $ \pi$ i _13/2 , h _9/2 isomer in the same nucleus, and to analogous structures in ¹⁹⁴Pb . The similarity of all four structures lends support to the suggestion that the 8⁺ ₁ configurations are of a similar oblate deformation to the 11^- isomers. The excitation energies of all three 8⁺ states in ¹⁹²Pb and ¹⁹⁰Pb are compared to systematics. The possibility that one of the 8⁺ states in ¹⁹²Pb is associated with a prolate shape is discounted.