Bifurcated, modular syntheses of chiral annulet triazacyclononanes

Three chiral 2,6-disubstituted tri-N-methyl azamacrocycles have been prepared by modular methods. These macrocycles were accessed from three chiral 1,4,7-triazaheptanes intermediates that were prepared by two independent routes. The first of these routes involved the benzylamine opening of chiral tosyl aziridines followed by debenzylation but was problematic on solubility grounds. A second, more effective, route was developed which avoided debenzylation by using ammonia in the nucleophilic opening of chiral tosyl aziridines.     

An SCF-MS-Xα study of the bonding and nuclear quadrupole coupling in diatomic halogens and interhalogens in the ground X Σ and B Π 0 excited states

SCF-MS-Xα calculations of the electronic structure of diatomic halogens and interhalogens XY (X = I, Br, Cl; Y = I, Br, Cl, F) have been used to investigate the bonding and nuclear quadrupole coupling in these molecules. Calculations have been carried out for the ground X ¹ Σ electronic state, and for the excited B ³ Π₀ state in the case of I₂, Br₂, ICl and IBr. Good agreement (to within 10% in most cases) is obtained between the calculated and observed nuclear quadrupole coupling constants for the molecules in the ground state. For the excited state the agreement is not as good, but the calculation does reproduce the observed decrease in the coupling constants to less than one quarter of their ground state values, and analysis of the contributions to the field gradients clearly shows the reasons for this. The electric dipole moments and electric quadrupole moments of the molecules have also been calculated. However, these prove to be much more strongly dependent on the variables used in the calculation (atomic sphere radii, inclusion of d orbitals). The results of the calculations have also been used to test some of the assumptions made in the Townes and Dailey method of analysis of nuclear quadrupole coupling data.     

The reaction intermediate spectrum. A new type of experiment in tandem mass spectrometry

A new scan is described which responds to ions that are intermediates in the dissociation of a mass-selected parent ion (m_p) to give a mass-selected daughter ion (m_d). The scan gives a simple mass v. abundance output for ions which satisfy this condition. It is implemented here on a BEQQ hybrid mass spectrometer using, in sequence, collision-induced dissociation occurring at high energy in the first reaction region, and low-energy collisional activation in the collision quadrupole. The experiment provides information on reaction sequences not available from single scans of other types. In the several cases examined, it is demonstrated that, among many conceivable fragmentation routes connecting a parent ion with a particular fragment ion, only a few are significant. Examination of reaction intermediate spectra also appears to be a fruitful new approach to mechanistic questions, as illustrated by consideration of the behavior of several isomeric octanones. These new spectra also have analytical value: they show good signal-to-noise ratios and allow ready distinction between isobaric and isomeric ions. A comparison of the reaction intermediate spectrum with a daughter spectrum obtained by the B/E linked-scanning technique reveals the contributions of artifact peaks which result from poor parent ion mass resolution in the latter. Reaction intermediate spectra combine information from the daughter spectra of m_p and the parent spectra of m_d and, as a specified portion of this data domain, have unique characteristics.     

Density functional theory and CCSD(T) evaluation of ionization potentials,redox potentials,and bond energies related to zirconocene polymerization catalysts

Quantum-mechanical-based computational design of molecular catalysts requires accurate and fast electronic structure calculations to determine and predict properties of transition-metal complexes. For Zr-based molecular complexes related to polyethylene catalysis, previous evaluation of density functional theory (DFT) and wavefunction methods only examined oxides and halides or select reaction barrier heights. In this work, we evaluate the performance of DFT against experimental redox potentials and bond dissociation enthalpies (BDEs) for zirconocene complexes directly relevant to ethylene polymerization catalysis. We also examined the ability of DFT to compute the fourth atomic ionization potential of zirconium and the effect the basis set selection has on the ionization potential computed with CCSD(T). Generally, the atomic ionization potential and redox potentials are very well reproduced by DFT, but we discovered relatively large deviations of DFT-calculated BDEs compared to experiment. However, evaluation of BDEs with CCSD(T) suggests that experimental values should be revisited, and our CCSD(T) values should be taken as most accurate.     

Expanding the Range of Bioorthogonal Tags for Multiplex Stimulated Raman Scattering Microscopy

Multiplex optical detection in live cells is challenging due to overlapping signals and poor signal-to-noise associated with some chemical reporters. To address this, the application of spectral phasor analysis to stimulated Raman scattering (SRS) microscopy for unmixing three bioorthogonal Raman probes within cells is reported. Triplex detection of a metallacarborane using the B−H stretch at 2480–2650 cm⁻¹, together with a bis-alkyne and deuterated fatty acid can be achieved within the cell-silent region of the Raman spectrum. When coupled to imaging in the high-wavenumber region of the cellular Raman spectrum, nine discrete regions of interest can be spectrally unmixed from the hyperspectral SRS dataset, demonstrating a new capability in the toolkit of multiplexed Raman imaging of live cells.     

Kinetics of the solvolysis of thetrans-dichlorobis(1,2-diaminoethane) cobalt(III) in water + ethanonitrile mixtures

Summary The kinetics of the solvolysis of thetrans-[Coen₂Cl₂]⁺ cation (en = 1,2-diaminoethane) have been investigated over a range of temperatures in water with added ethanonitrile which has much less effect on the solvent structure than the acohols already used as co-solvents with water for this solvolysis. However, the non-linear relationship obtained for the variation of log (rate constant) with the reciprocal of the dielectric constant at constant temperature shows that the effect of changing solvent structure is still important, although, as expected from the absence of pronounced extrema in the variation with composition in water + ethanonitrile of physical properties which are influenced by such changes in solvent structure, the enthalpy and entropy of activation for the solvolysis vary smoothly with composition. The application of a free energy cycle shows that changes in solvent structure affect the pentacoordinated cobalt(III) ion in the transition state more than the hexacoordinated cobalt(III) ion in the initial state.     

The parathiocyanogen electrode

Stable, yellow anodic films of parathiocyanogen (SCN) _x were formed on a platinum electrode from 2.8 M KSCN in methanol at 45 °C at a constant current of 20–40 mA cm⁻² for 15–30 min. Loosely bound orange crystals of a more amorphous character were removed by rinsing to leave an adherent yellow film with sharp Raman bands under 647.1 nm laser excitation at 627 cm⁻¹ (vCS), 1152 cm⁻¹ and 1236–1261 cm⁻¹ (vNN and vCN). The lack of electroactivity and short-lived photocurrents pointed to an insulating film at potentials up to 1.0 V (SHE). At more positive potentials, longer-lasting photocurrents were obtained, consistent with breakdown of the insulating film. XPS scans confirmed N:C:S ratios close to 1:1:1, with a deficiency of S of some 10% due to S lost as sulfate at the film surface. Oxidation of SeCN⁻ in neutral aqueous solution led to the formation of a less-stable orange paraselenocyanogen film with a Raman band at 1256–1267 cm⁻¹, which decomposed within a day to grey selenium. Received: 12 December 1997 / Accepted: 23 March 1998     

Fast computation,rotation, and comparison of low resolution spherical harmonic molecular surfaces

A procedure that rapidly generates an approximate parametric representation of macromolecular surface shapes is described. The parametrization is expressed as an expansion of real spherical harmonic basis functions. The advantage of using a parametric representation is that a pair of surfaces can be matched by using a quasi-Newton algorithm to minimize a suitably chosen objective function. Spherical harmonics are a natural and convenient choice of basis function when the task is one of search in a rotational search space. In particular, rotations of a molecular surface can be simulated by rotating only the harmonic expansion coefficients. This rotational property is applied for the first time to the 3-dimensional molecular similarity problem in which a pair of similar macromolecular surfaces are to be maximally superposed. The method is demonstrated with the superposition of antibody heavy chain variable domains. Special attention is given to computational efficiency. The spherical harmonic expansion coefficients are determined using fast surface sampling and integration schemes based on the tessellation of a regular icosahedron. Low resolution surfaces can be generated and displayed in under 10 s and a pair of surfaces can be maximally superposed in under 3 s on a contemporary workstation. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 383–395, 1999