Effects of short-term irradiation on photoinhibition and accumulation of mycosporine-like amino acids in sun and shade species of the red algal genus Porphyra

The effect of irradiance (40 and 840 micromol photons m(-2) s(-1)) of short-term (48 h) irradiation on photosynthetic activity (estimated as oxygen evolution and as chlorophyll fluorescence), specific absorption and fluorescence excitation spectra, photosynthetic pigment accumulation (chlorophyll a and biliproteins) and UV-absorbing compounds (mycosporine-like amino acids, MAAs) was investigated in sun and shade species of the red algal genus Porphyra collected in Trondheimsfjord (Norway). In the sun type, high irradiance exposure (840 micromol photons m(-2) s(-1)) did not alter the Chl a concentration, however, exposure to a lower irradiance (40 micromol photons m(-2) s(-1)) for 48 h significantly increased the chlorophyll concentration. The content of MAAs was significantly higher in the suntype than in the shade type algae. Porphyra-334 is the main MAA in this species followed by shinorine. The total content of MAAs significantly (P<0.05) increased in the sun type after 48 h exposure to both high and low irradiances. However, in the shade type, porphyra-334 significantly decreased (P<0.05) after both high and low irradiance exposure. Photosynthetic activity (as oxygen evolution) and the optimal quantum yield (F(v)/F(m)), as an indicator of photoinhibition, decreased under low and high irradiance in the shade type algae and no full recovery was observed when the algae were transferred to very low irradiation.The sun type algae presented a higher capacity of acclimation to increased irradiance than the shade type algae. This high acclimation of sun type algae to short term high irradiance exposure (48 h) is explained by the higher thermal dissipation. This was estimated as the ratio of nonphotochemical quenching related to the light dose (q(N):dose) and by the accumulation of MAAs.     

High-temperature pyrolysis/gas chromatography/isotope ratio mass spectrometry: simultaneous measurement of the stable isotopes of oxygen and carbon in cellulose

Stable isotope analysis of cellulose is an increasingly important aspect of ecological and palaeoenvironmental research. Since these techniques are very costly, any methodological development which can provide simultaneous measurement of stable carbon and oxygen isotope ratios in cellulose deserves further exploration. A large number (3074) of tree-ring α-cellulose samples are used to compare the stable carbon isotope ratios (δ(13)C) produced by high-temperature (1400°C) pyrolysis/gas chromatography (GC)/isotope ratio mass spectrometry (IRMS) with those produced by combustion GC/IRMS. Although the two data sets are very strongly correlated, the pyrolysis results display reduced variance and are strongly biased towards the mean. The low carbon isotope ratios of tree-ring cellulose during the last century, reflecting anthropogenic disturbance of atmospheric carbon dioxide, are thus overestimated. The likely explanation is that a proportion of the oxygen atoms are bonding with residual carbon in the reaction chamber to form carbon monoxide. The 'pyrolysis adjustment', proposed here, is based on combusting a stratified sub-sample of the pyrolysis results, across the full range of carbon isotope ratios, and using the paired results to define a regression equation that can be used to adjust all the pyrolysis measurements. In this study, subsamples of 30 combustion measurements produced adjusted chronologies statistically indistinguishable from those produced by combusting every sample. This methodology allows simultaneous measurement of the stable isotopes of carbon and oxygen using high-temperature pyrolysis, reducing the amount of sample required and the analytical costs of measuring them separately.     

Effect of chain length on the assembly of mercaptoalkanoic acid multilayer films ligated through divalent Cu ions

The structural stability of alkenthiolate monolayers assembled on gold surfaces is a result of the well-defined organization of the individual molecules within the film. The formation of three-dimensional films assembled by stacking multiple molecular monolayers is substantially more challenging because the correct organization of the molecular components is required not only within the individual monolayers but also between the monolayers of the film. In this paper we examine the structure of multilayer films based on mercaptoalkanoic acid monolayers in which ligation between adjacent monolayers is achieved using the interaction of carboxylic acid and thiol groups with a divalent Cu ion. Using contact angle analysis and atomic force microscopy, we show that the use of Cu(2+) has profound implications on the properties and structure of the multilayer film. In particular, the divalent ions effectively prohibit the complete assembly of the next monolayer. For multilayer SAMs assembled from short alkane chains with six methylene groups, we find that molecules in the incomplete adlayer organize themselves randomly over the underlying monolayer. However, as the number of methylene groups increases (11 and 16 methylene groups), the upper layer tends to fracture into discrete islands which cover around 50% of the surface. The height of these islands is found to be equal to that expected for a complete, well-ordered monolayer assembled from the equivalent mercaptoalkanoic acid molecules. This relationship between chain length and island growth results from the migration of molecules into ordered aggregates driven by the reduction of free energy associated with maximizing intermolecular interactions.     

Low temperature magnetism of Cd-doped Ce2RhIn8 heavy fermion antiferromagnet

We report the low temperature magnetic properties of Cd-doped single crystals of Ce₂RhIn₈ grown from In-flux. Measurements of temperature-dependent magnetic susceptibility, heat capacity, electrical resistivity and X-ray magnetic scattering revealed that Cd-doping enhances the antiferromagnetic ordering temperature from for crystals with nominal Cd-concentration of ~20%. Similarly to the pure compound, Cd-doped Ce₂RhIn₈ presents just below T_N a commensurate antiferromagnetic structure with a propagation vector . Comparisons between our results and the general effects of Cd-doping on the single layer related family CeMIn₅ (M=Co, Rh and Ir) will also be given.     

Formal Hypothesis Tests for Additive Structure in Random Forests

While statistical learning methods have proved powerful tools for predictive modeling, the black-box nature of the models they produce can severely limit their interpretability and the ability to conduct formal inference. However, the natural structure of ensemble learners like bagged trees and random forests has been shown to admit desirable asymptotic properties when base learners are built with proper subsamples. In this work, we demonstrate that by defining an appropriate grid structure on the covariate space, we may carry out formal hypothesis tests for both variable importance and underlying additive model structure. To our knowledge, these tests represent the first statistical tools for investigating the underlying regression structure in a context such as random forests. We develop notions of total and partial additivity and further demonstrate that testing can be carried out at no additional computational cost by estimating the variance within the process of constructing the ensemble. Furthermore, we propose a novel extension of these testing procedures using random projections to allow for computationally efficient testing procedures that retain high power even when the grid size is much larger than that of the training set.     

Generalized Harmonic Functions and the Dewetting of Thin Films

This paper describes the solvability of Dirichlet problems for Laplace's equation when the boundary data is not smooth enough for the existence of a weak solution in H¹Ω. Scales of spaces of harmonic functions and of boundary traces are defined and the solutions are characterized as limits of classical harmonic functions in special norms. The generalized harmonic functions, and their norms, are defined using series expansions involving harmonic Steklov eigenfunctions on the domain. It is shown that the usual trace operator has a continuous extension to an isometric isomorphism of specific spaces. This provides a characterization of the generalized solutions of harmonic Dirichlet problems. Numerical simulations of a model problem are described. This problem is related to the dewetting of thin films and the associated phenomenology is described.     

A formal system for fuzzy reasoning

A formal system for fuzzy reasoning is described which is capable of dealing rationally with evidence which may be inconsistent and/or involve degrees of belief. The basic idea is that the meaning of each formal sentence should be given by a certain commitment or bet associated with it. Each item of evidence is first expressed in the form of such a (hypothetical) bet, which is then written as a formal sentence in a language related to ?ukasiewicz logic. The sentences may be weighted to express the relative reliability of the various informants. A sentence is considered to “follow” from the evidence if the bet it represents can be offered by a speaker without fear of loss, on the assumption that the bets representing various items of evidence have been offered to him. A detailed account, illustrated by concrete examples, is given of the procedures by which an arbitrary sentence in common language can be translated into a formal sentence. The treatment of inconsistency, degrees of belief, and weights is illustrated by a practical example which is solved in full. It is shown that in most practical cases the computations involved in the process of formal reasoning reduce to a problem in linear programming. In the last section the relation between this system and the procedures advocated by Zadeh is examined. It is shown that, subject to certain modifications in formulas, there is general agreement in the region of overlap.     

The chromium spin density wave: magnetic X-ray scattering studies with polarisation analysis

We report on X-ray magnetic diffraction studies of the spin density wave antiferromagnetism formed in the conduction electron band of chromium. Non-resonant X-ray magnetic scattering was used to directly determine that chromium has zero orbital magnetisation. Furthermore, the azimuthal dependence of this scattering provides unique evidence that chromium forms a linearly polarised wave. In the vicinity of the K absorption edge, resonant X-ray magnetic scattering was observed. A consistent model of the magnetic scattering has been derived from the resonant and non-resonant magnetic amplitudes. The enhancement of the magnetic intensity arises primarily from dipole transitions from the core 1s level to 4p states. Quadrupole transitions to the magnetic 3d states are essentially non-existent due to their sensitivity to (and the absence of) orbital moment. This effect is predicted from atomic considerations of the 3d⁵ ( = 0) transition metal ions. Received 22 September 2000