Progressive methods in multiple criteria decision analysis

This is a summary of the author’s Ph.D. thesis, defended on 8 October 2007 at the University of Luxembourg and the Faculté Polytechnique de Mons, under the joint supervision of Raymond Bisdorff and Marc Pirlot. The thesis is written in English and is available from the author upon request. The work is situated in the field of multiple criteria decision analysis. It mostly deals with what we call progressive methods, i.e., iterative procedures presenting partial conclusions to the decision maker that can be refined at further steps of the analysis. Such progressive methods have been studied in the context of multiattribute value theory and outranking methods.      

Numerical simulation of transversely isotropic material using adaptive FEM

Lightweight construction plays an important role in the global task to save energy. A common approach to reduce the weight of structures is the use of composite materials like fibre reinforced polymers (FRP). FRP can be characterised by transversely isotropic material behaviour, a special case of anisotropy. In our arcticle we present the necessary efforts to include such material behaviour into an existing adaptive FEM code. (© 2011 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Electronic spectroscopy of the 3d Rydberg states of NO-Rg (Rg=Ne,Ar,Kr,Xe) van der Waals complexes

We have employed (2+1) resonance-enhanced multiphoton ionization spectroscopy to record electronic absorption spectra of NO-Rg (Rg=Ne,Ar,Kr) van der Waals complexes. The nitric oxide molecule is the chromophore, and the excitation corresponds to an electron being promoted from the 2ppi* orbital to 3dsigma, 3dpi, and 3ddelta Rydberg states. We review the ordering of the 3dlambda states of NO and use this as a basis for discussing the 3d components in the NO-Rg complexes, in terms of the interactions between the Rydberg electron, the core, and the Rg atom. Predissociation of the H' 2Pi state occurs through the F2Delta state for NO-Ar and NO-Kr, and this will be considered. We shall also outline problems encountered when trying to record similar spectra for NO-Xe, related to the presence of atomic Xe resonances.     

A minimalist approach toward protein recognition by epitope transfer from functionally evolved beta-sheet surfaces

New approaches for identifying small molecules that specifically target protein surfaces as opposed to active site clefts are of much current interest. Toward this goal, we describe a three-step methodology: in step one, we target a protein of interest by directed evolution of a small beta-sheet scaffold; in step two, we identify residues on the scaffold that are implicated in binding; and in step three, we transfer the chemical information from the beta-sheet to a small molecule mimic. As a case study, we targeted the proteolytic enzyme thrombin, involved in blood coagulation, utilizing a library of beta-sheet epitopes displayed on phage that were previously selected for conservation of structure. We found that the thrombin-binding, beta-sheet displaying mini-proteins retained their structure and stability while inhibiting thrombin at low micromolar inhibition constants. A conserved dityrosine recognition motif separated by 9.2 A was found to be common among the mini-protein inhibitors and was further verified by alanine scanning. A molecule containing two tyrosine residues separated by a linker that matched the spacing on the beta-sheet scaffold inhibited thrombin, whereas a similar dityrosine molecule separated by a shorter 6 A linker could not. Moreover, kinetic analysis revealed that both the mini-protein as well as its minimalist mimic with only two functional residues exhibited noncompetitive inhibition of thrombin. Thus, this reductionist approach affords a simple methodology for transferring information from structured protein scaffolds to yield small molecule leads for targeting protein surfaces with novel mechanisms of action.     

Interfacial charge-transfer switch: ruthenium-dppz compounds anchored to nanocrystalline TiO2

The compound Ru(bpy)2(dppz-R)(PF6)2, where bpy is 2,2'-bipyridine and dppz-R is 11-(diethoxyphosphorylmethyl)dipyrido[3,2-a:2',3'-c]phenazine, was prepared and anchored to mesoporous nanocrystalline (anatase) TiO2 thin films as a probe of the effects of interfacial water on excited-state charge transfer processes at semiconductor interfaces. In nitrogen-saturated fluid acetonitrile, the Ru(bpy)2(dppz-R)(PF6)2 compound was found to be highly photoluminescent. Water was found to quench the excited state by a mechanism adequately described by the Perrin model, from which the radius of quenching was abstracted, 75 +/- 2 A. The Ru(bpy)2(dppz-R)(PF6)2 compounds were found to bind to the TiO2 thin films in high surface coverages, 5 x 10(-8) mol cm(-2). When these films were immersed in acetonitrile, long-lived excited states (tau = 825 ns) that were quenched by the addition of water were observed. About 30% of the excited states could not be quenched by water. Efficient electron injection, phi(inj) = 0.8, was observed after light excitation of Ru(bpy)2(dppz-R)/TiO2 in a 0.1 M LiClO4/acetonitrile solution. The addition of large concentrations of water, >0.5 M, was found to decrease the injection yield to phi(inj) = 0.3.     

Toward exceeding the Shockley-Queisser limit: photoinduced interfacial charge transfer processes that store energy in excess of the equilibrated excited state

Nanocrystalline (anatase), mesoporous TiO2 thin films were functionalized with [Ru(bpy)2(deebq)](PF6)2, [Ru(bq)2(deeb)](PF6)2, [Ru(deebq)2(bpy)](PF6)2, [Ru(bpy)(deebq)(NCS)2], or [Os(bpy)2(deebq)](PF6)2, where bpy is 2,2'-bipyridine, bq is 2,2'-biquinoline, and deeb and deebq are 4,4'-diethylester derivatives. These compounds bind to the nanocrystalline TiO2 films in their carboxylate forms with limiting surface coverages of 8 (+/- 2) x 10(-8) mol/cm2. Electrochemical measurements show that the first reduction of these compounds (-0.70 V vs SCE) occurs prior to TiO2 reduction. Steady state illumination in the presence of the sacrificial electron donor triethylamine leads to the appearance of the reduced sensitizer. The thermally equilibrated metal-to-ligand charge-transfer excited state and the reduced form of these compounds do not inject electrons into TiO2. Nanosecond transient absorption measurements demonstrate the formation of an extremely long-lived charge separated state based on equal concentrations of the reduced and oxidized compounds. The results are consistent with a mechanism of ultrafast excited-state injection into TiO2 followed by interfacial electron transfer to a ground-state compound. The quantum yield for this process was found to increase with excitation energy, a behavior attributed to stronger overlap between the excited sensitizer and the semiconductor acceptor states. For example, the quantum yields for [Os(bpy)2(dcbq)]/TiO2 were phi(417 nm) = 0.18 +/- 0.02, phi(532.5 nm) = 0.08 +/- 0.02, and phi(683 nm) = 0.05 +/- 0.01. Electron transfer to yield ground-state products occurs by lateral intermolecular charge transfer. The driving force for charge recombination was in excess of that stored in the photoluminescent excited state. Chronoabsorption measurements indicate that ligand-based intermolecular electron transfer was an order of magnitude faster than metal-centered intermolecular hole transfer. Charge recombination was quantified with the Kohlrausch-Williams-Watts model.     

Structure elucidation of cyclic pyoverdins and examination of rearrangement reactions in MS/MS experiments by determination of exact product ion masses

Structure elucidation of naturally occurring linear and cyclic peptidic compounds can be complicated by rearrangement reactions induced upon collision activation (CA) when parts of the molecule migrate, suggesting incorrect substitution patterns. Such complex rearrangements are examined and discussed for two iron complexing compounds produced by the bacterial genus Pseudomonas (so-called pyoverdins). Various MS2- and MS3-product ion experiments were performed using a quadrupole-ion trap (QIT) at low resolution and a FT-ICR at high resolution allowing accurate mass determinations. The results of the multidimensional study confirm the proposed processes. On the basis of the series of tandem-MS experiments the structure of a new pyoverdin from a P. fluorescens strain [PVD(D47)] is deduced.     

Nanometer Channels and Cages within the Extended Basic Mercurous Cations [(Hg2)3(OH)2]4+ and [(Hg2)2O]2+

The two‐ and three‐dimensional mercurous cations [(Hg₂)₃(OH)₂]⁴⁺ and [(Hg₂)₂O]²⁺ crystallize with channels and cages of roughly 1 nm diameter from aqueous solutions dependent upon the acidity of the solution. Crystal structures were determined, for example, for [Zn(H₂O)₆][(Hg₂)₃(OH)₂](NO₃)₆ (trigonal, space group P321, a = 1183.5(2) pm, c = 534.8(1) pm, Z = 1, R1 = 0.0351 for I₀ > 2σ(I₀)) and for [(Hg₂)₂O][Pb(NO₃)₃]₂ (cubic, space group , a = 1543.1(2) pm, Z = 8, R1 = 0.0534 I₀ > 2σ(I₀)).     

Synthesis and characterization of oligoproline-based molecular assemblies for light harvesting

Helical oligoproline arrays provide a structurally well-defined environment for building photochemical energy conversion assemblies. The use of solid-phase peptide synthesis (SPPS) to prepare four such arrays, consisting of 16, 17, 18, and 19 amino acid residues, is described here. Each array contains the chromophore [Rub'(2)m](PF(6))(2) (b' = 4,4'-diethylamidocarbonyl-2,2'-bipyridine; m = 4-methyl-2,2'-dipyridine-4'-carboxylic acid) and the electron transfer donor PTZ (phenothiazine). The arrays differ systematically in the distance between the redox-active metal complex and PTZ sites. They have been used in photophysical studies to provide insight into the distance dependence of electron transfer. (J. Am. Chem. Soc. 2004, 126, 14506-14514). This work describes the synthesis, purification, and characterization of the oligoproline arrays, including a general procedure for the synthesis of related arrays.     

Calibration of the Pseudo-Reaction-Zone model for detonation wave propagation

An approach for the calibration of an advanced programmed burn (PB) model for detonation performance calculations in high explosive systems is detailed. Programmed burn methods split the detonation performance calculation into two components: timing and energy release. For the timing, the PB model uses a Detonation Shock Dynamics (DSD) surface propagation model, where the normal surface speed is a function of local surface curvature. For the energy release calculation and subsequent hydrodynamic flow evolution, a Pseudo-Reaction-Zone (PRZ) model is used. The PRZ model is similar to a reactive burn model in that it converts reactants into products at a finite rate, but it has a reaction rate dependent on the normal surface speed derived from the DSD calculation. The PRZ reaction rate parameters must be calibrated in such a way that the rate of energy release due to reaction in multi-dimensional geometries is consistent with the timing calculation provided by the DSD model. Our strategy for achieving this is to run the PRZ model in a detonation shock-attached frame in a compliant 2D planar slab geometry in an equivalent way to a reactive burn model, from which we can generate detonation front shapes and detonation phase speed variations with slab thickness. In this case, the D _n field used by the PRZ model is then simply the normal detonation shock speed rather than the DSD surface normal speed. The PRZ rate parameters are then iterated on to match the equivalent surface front shapes and surface phase speed variations with slab thickness derived from the target DSD model. For the purposes of this paper, the target DSD model is fitted to the performance properties of an idealised condensed-phase reactive burn model, which allows us to compare the detonation structure of the calibrated PRZ model to that of the originating idealised-condensed phase model.