Identification of low molecular weight proteins isolated by 2-D liquid separations

Proteins with molecular mass (M(r)) <20 kDa are often poorly separated in 2-D sodium dodecyl sulfate polyacrylamide gel electrophoresis. In addition, low-M(r) proteins may not be readily identified using peptide mass fingerprinting (PMF) owing to the small number of peptides generated in tryptic digestion. In this work, we used a 2-D liquid separation method based on chromatofocusing and non-porous silica reversed-phase high-performance liquid chromatography to purify proteins for matrix-assisted laser desorption/ionization time-of-flight mass spectrometric (MALDI-TOFMS) analysis and protein identification. Several proteins were identified using the PMF method where the result was supported using an accurate M(r) value obtained from electrospray ionization TOFMS. However, many proteins were not identified owing to an insufficient number of peptides observed in the MALDI-TOF experiments. The small number of peptides detected in MALDI-TOFMS can result from internal fragmentation, the few arginines in its sequence and incomplete tryptic digestion. MALDI-QTOFMS/MS can be used to identify many of these proteins. The accurate experimental M(r) and pI confirm identification and aid in identifying post-translational modifications such as truncations and acetylations. In some cases, high-quality MS/MS data obtained from the MALDI-QTOF spectrometer overcome preferential cleavages and result in protein identification.     

Solution- and solid-phase synthesis of natural product-like tetrahydroquinoline-based polycyclics having a medium size ring

A solid-phase synthesis of tetrahydroquinoline-derived polycyclic 4, having a medium size ring with an enamide functionality, was achieved from tetrahydroquinoline derivative 3 in five steps with overall 40-45% yield. An enantiopure, tetrahydroquinoline-derived beta-amino ester, 1, was converted into compound 2 that has a free phenolic hydroxyl group as an anchoring site for solid-phase synthesis. The solid-phase worked well for this sequence, in which the synthesis of the unsaturated eight-membered enamide lactam was obtained by a ring-closing metathesis approach. Compound 4 is a novel, natural product-like polycyclic derivative that could further be utilized in library generation for developing small molecule chemical probes.     

Excited state properties of mixed phosphine 2-(2'-pyridyl)quinoline complexes of ruthenium(II)

Mixed ligand complexes of the type Ru(pq)(2)(PP)(2+) (pq = 2,2'-pyridylquinoline and PP = one bidentate or two monodentate phosphine ligands) have been prepared from the appropriate phosphine and Ru(pq)(2)Cl(2). The room temperature absorption spectra and low temperature (77 K) emission spectra, emission lifetimes, and quantum yields have been measured for the series of complexes and compared with those of Ru(pq)(3)(2+) and analogous Ru(bpy)(2)(PP)(2+) complexes (bpy = 2,2'-bipyridine) where possible. Emission spectra have been fit using a single mode Franck-Condon analysis. The visible absorption bands and emission bands are assigned to MLCT transitions that are blue shifted relative to Ru(pq)(3)(2+), while the emission lifetimes and quantum yields are increased. The trends in the nonradiative rate constants, k(nr), are described in terms of the energy gap, E(0), and the Huang-Rhys factor, S(M), which were obtained from the spectral fittings, and are correlated with the phosphine ligand structures.