Angle-resolved X-ray photoelectron spectroscopy of the surface of imidazolium ionic liquids

The surfaces of three imidazolium based ionic liquids with a common anion were studied with angle-resolved X-ray photoelectron spectroscopy (XPS). The room temperature ionic liquids (RTILs): 1-butyl-3-methylimidazolium (bmim), 1-hexyl-3-methylimidazolium (hmim), and 1-octyl-3-methylimidazolium (omim) tetrafluoroborates, were meticulously purified and dried under vacuum. Survey and high-resolution spectra were obtained at different take-off angles (0-84 degrees ), thus increasing the surface sensitivity of the measurement. No impurities were detected and the survey spectra at normal emission (0 degrees ) confirmed the stoichiometric composition of the liquids. However, the spectra at take-off angles of 60, 70, 80 and 84 degrees indicated a higher amount of carbon. High resolution spectra of C1s, at these angles, showed an increased amount of aliphatic carbon when compared to the spectra at normal emission. The longer the side chain (R) of the imidazolium cation (Rmim), the larger was the amount of aliphatic carbon detected. Previous studies with other surface sensitive techniques have yielded contradictory conclusions about the surface orientation of the Rmim. We conclude unequivocally that the alkyl chain of the imidazolium ring of the investigated RTILs is oriented away from the liquid. Our study demonstrates the ability of XPS to probe the structure, along with the composition, of the free liquid surface by comparing signals from different penetration depths.     

Isolation of extendable transition metal incorporated polyoxometalate intermediates with structural control

Three discrete cobalt-substituted silicotungstates, [Co3(H2O)(B-beta-SiW9O34)(B-beta-SiW8O29(OH)2)]12- (1), [Co3(H2O)(B-alpha-SiW9O34)(B-beta-SiW8O31)]14- (2), and [Co9Cl2(OH)3(H2O)9(B-beta-SiW8O31)3]17- (3), have been synthesized using a synthetic approach involving Co(II) ions, the dilacunary [gamma-SiW10O36]8- polyanion and a bulky organic cation in basic media; all three compounds have been fully characterized and their position as structural intermediates in Co-containing silicotungstate chemistry is described.     

Robotic hierarchical mixing for the production of combinatorial libraries of proteins and small molecules

We present a method to automatically plan a robotic process to mix individual combinations of reactants in individual reaction vessels (vials or wells in a multiwell plate), mixing any number of reactants in any desired stoichiometry, and ordering the mixing steps according to an arbitrarily complex treelike assembly protocol. This process enables the combinatorial generation of complete or partial product libraries in individual reaction vessels from intermediates formed in the presence of different sets of reactants. It can produce either libraries of chimeric genes constructed by ligation of fragments from different parent genes or libraries of chemical compounds constructed by convergent synthesis. Given concentrations of the input reactants and desired amounts or volumes of the products, our algorithm, RoboMix, computes the required reactant volumes and the resulting product concentrations, along with volumes and concentrations for all intermediate combinations. It outputs a sequence of robotic liquid transfer steps that ensures that each combination is correctly mixed even when individualized stoichiometries are employed and with any fractional yield for a product. It can also account for waste in robotic liquid handling and residual volume needed to ensure accurate aspiration. We demonstrate the effectiveness of the method in a test mixing dyes with different UV-vis absorption spectra, verifying the desired combinations spectroscopically.     

A TriPPPro-Nucleotide Reporter with Optimized Cell-Permeable Dyes for Metabolic Labeling of Cellular and Viral DNA in Living Cells

The metabolic labeling of nucleic acids in living cells is highly desirable to track the dynamics of nucleic acid metabolism in real-time and has the potential to provide novel insights into cellular biology as well as pathogen-host interactions. Catalyst-free inverse electron demand Diels–Alder reactions (iEDDA) with nucleosides carrying highly reactive moieties such as axial 2-trans-cyclooctene (2TCOa) would be an ideal tool to allow intracellular labeling of DNA. However, cellular kinase phosphorylation of the modified nucleosides is needed after cellular uptake as triphosphates are not membrane permeable. Unfortunately, the narrow substrate window of most endogenous kinases limits the use of highly reactive moieties. Here, we apply our TriPPPro (triphosphate pronucleotide) approach to directly deliver a highly reactive 2TCOa-modified 2′-deoxycytidine triphosphate reporter into living cells. We show that this nucleoside triphosphate is metabolically incorporated into de novo synthesized cellular and viral DNA and can be labeled with highly reactive and cell-permeable fluorescent dye-tetrazine conjugates via iEDDA to visualize DNA in living cells directly. Thus, we present the first comprehensive method for live-cell imaging of cellular and viral nucleic acids using a two-step labeling approach.     

Fabrication and Characterization of an Electro-Compacted Collagen/Elastin/Hyaluronic Acid Sheet as a Potential Skin Scaffold

The development of biomimetic structures with integrated extracellular matrix (ECM) components represents a promising approach to biomaterial fabrication. Here, an artificial ECM, comprising the structural protein collagen I and elastin (ELN), as well as the glycosaminoglycan hyaluronan (HA), is reported. Specifically, collagen and ELN are electrochemically aligned to mimic the compositional characteristics of the dermal matrix. HA is incorporated into the electro-compacted collagen-ELN matrices via adsorption and chemical immobilization, to give a final composition of collagen/ELN/HA of 7:2:1. This produces a final collagen/ELN/hyaluronic acid scaffold (CEH) that recapitulates the compositional feature of the native skin ECM. This study analyzes the effect of CEH composition on the cultivation of human dermal fibroblast cells (HDFs) and immortalized human keratinocytes (HaCaTs). It is shown that the CEH scaffold supports dermal regeneration by promoting HDFs proliferation, ECM deposition, and differentiation into myofibroblasts. The CEH scaffolds are also shown to support epidermis growth by supporting HaCaTs proliferation, differentiation, and stratification. A double-layered epidermal-dermal structure is constructed on the CEH scaffold, further demonstrating its ability in supporting skin cell function and skin regeneration.     

Spectroscopic studies of the phase transition in ammonia borane: Raman spectroscopy of single crystal NH3BH3 as a function of temperature from 88 to 330 K

Raman spectra of single crystal ammonia borane, NH3BH3, were recorded as a function of temperature from 88 to 300 K using Raman microscopy and a variable temperature stage. The orthorhombic to orientationally disordered tetragonal phase transition at 225 K was clearly evident from the decrease in the number of vibrational modes. However, some of the modes in the orthorhombic phase appeared to merge 10-12 K below the phase transition perhaps suggesting the presence of an intermediate phase. Factor group analysis of vibrational spectra for both orthorhombic and tetragonal phase is provided. In addition, electronic structure calculations are used to assist in the interpretation and assignment of the normal modes.