Microfluidic electroporation of robust 10-microm vesicles for manipulation of picoliter volumes

We present a new way to transport and handle picoliter volumes of analytes in a microfluidic context through electrically monitored electroporation of 10-25 microm vesicles. In this method, giant vesicles are used to isolate analytes in a microfluidic environment. Once encapsulated inside a vesicle, contents will not diffuse and become diluted when exposed to pressure-driven flow. Two vesicle compositions have been developed that are robust enough to withstand electrical and mechanical manipulation in a microfluidic context. These vesicles can be guided and trapped, with controllable transfer of material into or out of their confined environment. Through electroporation, vesicles can serve as containers that can be opened when mixing and diffusion are desired, and closed during transport and analysis. Both vesicle compositions contain lecithin, an ethoxylated phospholipid, and a polyelectrolyte. Their performance is compared using a prototype microfluidic device and a simple circuit model. It was observed that the energy density threshold required to induce breakdown was statistically equivalent between compositions, 10.2+/-5.0 mJ/m2 for the first composition and 10.5+/-1.8 mJ/m2 for the second. This work demonstrates the feasibility of using giant, robust vesicles with microfluidic electroporation technology to manipulate picoliter volumes on-chip.     

Reagentless, reusable, ultrasensitive electrochemical molecular beacon aptasensor

A bifunctional derivative of the thrombin-binding aptamer with a redox-active Fc moiety and a thiol group at the termini of the aptamer strand was synthesized. The ferrocene-labeled aptamer thiol was self-assembled through S-Au bonding on a polycrystalline gold electrode surface and the surface was blocked with 2-mercaptoethanol to form a mixed monolayer. By use of a fluorescent molecular beacon, the effect of counterions on quadruplex formation was established. The aptamer-modified electrode was characterized electrochemically by cyclic voltammetry (CV), differential pulse voltammetry (DPV), and electrochemical impedance spectroscopy (EIS). The modified electrode showed a voltammetric signal due to a one-step redox reaction of the surface-confined ferrocenyl moiety of the aptamer immobilized on the electrode surface in 10 mM N-(2-hydroxyethyl)piperazine-N'-2-ethanesulfonic acid (HEPES) buffer of pH 8.0. An increase in the DPV current signal was evident after blocking with 2-mercaptoethanol, effectively removing aptamer nonspecifically absorbed rather than bound to electrode surface or due to the formation of the aptamer-thrombin affinity interaction. The impedance measurement, in agreement with the differential pulse voltammetry (DPV), showed decreased Faradaic resistances in the same sequence. The "signal-on" upon thrombin association could be attributed to a change in conformation from random coil-like configuration on the probe-modified film to the quadruplex structure. The DPV of the modified electrode showed a linear response of the Fc oxidation signal to the increase in the thrombin concentration in the range between 5.0 and 35.0 nM with a linear correlation of r = 0.9988 and a detection limit of 0.5 nM. The molecular beacon aptasensor was amenable to full regeneration by simply unfolding the aptamer in 1.0 M HCl, and could be regenerated 25 times with no loss in electrochemical signal upon subsequent thrombin binding.     

Photodissociation dynamics of pyrimidine

Photodissociation of pyrimidine at 193 and 248 nm was investigated separately using vacuum ultraviolet photoionization at 118.4 and 88.6 nm and multimass ion imaging techniques. Six dissociation channels were observed at 193 nm, including C4N2H4 --> C4N2H3 + H and five ring opening dissociation channels, C4N2H4 --> C3NH3 + HCN, C4N2H4 --> 2C2NH2, C4N2H4 --> CH3N + C3NH, C4N2H4 --> C4NH2 + NH2, and C4N2H4 --> CH2N + C3NH2. Only the first four channels were observed at 248 nm. Photofragment translational energy distributions and dissociation rates indicate that dissociation occurs in the ground electronic state after internal conversion at both wavelengths. The dissociation rates were found to be >5 x 10(7) and 1 x 10(6) s(-1) at 193 and 248 nm, respectively. Comparison with the potential energies from ab initio calculations have been made.     

Theoretical study of one-, two-, and three-photon absorption properties for a series of Y-shaped molecules

In this paper, the equilibrium geometries, one-, two-, and three-photon absorption properties, and the transition nature of a series of Y-shaped molecules which possess an imidazole-thiazole core have been theoretically studied by using the parametrization model 3 and Zerner's intermediate neglect of differential overlap methods. Our calculated results have confirmed the experimental findings that the investigated molecules are all promising multiphoton absorption materials and both the two-photon absorption and the three-photon absorption cross sections are seriatim increscent along with the increase of the electron-donor strength. The nonlinear optical phenomenon originates from the intramolecular charge transfer within the pi-conjugated system. The calculated results indicate that the heterocyclic core increases the two- and three-photon absorption cross sections due to its pi-excessive nature. So it can provide more free electrons to enlarge the charge transfer within the molecule system. In addition, the design of Y shape and the sulfonyl-based electron-accepting group play a part in the enhancement of multiphoton absorption. It is notable that molecules with heterocyclic core will provide favorable condition for multiphoton absorption applications.     

Investigation of corannulene for molecular hydrogen storage via computational chemistry and experimentation

Molecular simulations for hydrogen physisorption with corannulene molecules arranged according to their crystal structure result in good agreement with the weight-percent hydrogen stored as determined experimentally employing a 3-g sample of highly crystalline corannulene at ambient temperatures and 72 bar of pressure. Calculated enthalpies of adsorption for corannulene/hydrogen molecular systems obtained from ab initio calculations which take into account electron correlation via second-order M?ller-Plesset perturbation theory are in good agreement with literature experimental enthalpies of adsorption for activated carbons interacting with molecular hydrogen. Ab initio results also show that corannulene molecules arranged in a sandwich structure are important for approximately doubling the binding energy of corannulene interacting with molecular hydrogen through a cooperative interaction. To test the effects of finite temperatures and pressures, stack arrays were used as input for molecular dynamics simulations and indicate that physisorption mechanisms including van der Waals forces and dipole-induced dipole interactions may yield enhanced adsorption capacity in relation to other carbon-based materials. These results will be instrumental in identifying interlayer separations of an array of corannulene or related molecules that may provide a high weight percent of physisorbed hydrogen.     

Atomic arrangements inside Ru and Os nanoislands spontaneously deposited on Pt(111)

The atomic arrangements inside Ru and Os nanoislands spontaneously deposited on Pt(111) electrode surface were observed with electrochemical scanning tunneling microscopy. The surperlattice of the pristine Ru nanodeposits is (square root of 3 x square root of 3)R30 degrees -RuO+. Upon reduction, the Ru nanodeposits are compressed to a uniaxially incommensurate (square root of 3 x square root of 2)R30 degrees -Ru structure, which does not change during the following reoxidation. The atomic arrangement inside the pristine Os nanodeposits is an incommensurate (square root of 2 x square root of 2)-OsO+ structure, which does not transform during the subsequent reduction-oxidation cycles. The structures of the Ru and Os nanodeposits are discussed in terms of removal and insertion of oxygen ions depending on electrode potential.     

Peptide derivatization as a strategy to form fixed-charge peptide radicals

As a means of generating fixed-charge peptide radicals in the gas phase we have examined the collision-induced dissociation (CID) chemistry of ternary [Cu(II)(terpy)(TMPP-M)]2+ complexes, where terpy = 2,2':6'2'-terpyridine and TMPP-M represents a peptide (M) modified by conversion of the N-terminal amine to a [tris(2,4,6-trimethoxyphenyl)phosphonium]acetamide (TMPP-) fixed-charge derivative. The following modified peptides were examined: oligoglycines, (Gly)n (n = 1-5), alanylglycine, glycylalanine, dialanine, trialanine and leucine-enkephaline (YGGFL). The [Cu(II)(terpy)(TMPP-M)]2+ complexes are readily formed upon electrospray ionization (ESI) of a mixture of derivatized peptide and [Cu(II)(terpy)(NO3)2] and generally fragment to form transient peptide radical cations, TMPP-M+*, which undergo rapid decarboxylation for the simple aliphatic peptides. This is contrasted with the complexes containing the unmodified peptides, which predominantly undergo fragmentation of the coordinated peptide. These differences demonstrate the importance of proton mobility in directing fragmentation of ternary copper(II) peptide complexes. In the case of leucine-enkephaline, a sufficient yield of the radical cation was obtained to allow further CID. The TMPP-YGGFL+* ion showed a rich fragmentation chemistry, including CO2 loss, side-chain losses of an isopropyl radical, 2-methylpropene and p-quinomethide, and *a1 and *a4 sequence ion formation. In contrast, the even-electron TMPP-YGGFL+ ion fragments to form *a(n) and *b(n) sequence ions as well as the [*b4 + H2O]+ rearrangement ion.     

Swelling behavior of chitosan hydrogels in ionic liquid-water binary systems

The swelling behavior of chitosan hydrogels in ionic liquid-water binary systems was studied using hydrophilic room-temperature ionic liquids (RTILs) to elucidate the swelling mechanism of chitosan hydrogels. No penetration of RTIL into a dry chitosan material was observed. Swelling was achieved by soaking in water-RTIL binary mixtures, with larger swelling observed at higher water contents. In one instance, the binary mixture was acidic and produced larger than expected swelling due to the dissociation of the amine groups in the chitosan. The equilibrium binary system content behavior of the chitosan hydrogels depended upon the amount of free water, which is a measure of the number of water molecules that do not interact with the ionic liquid. After evaporation of water, remnant RTIL remained in the chitosan network and hardness testing indicated a plasticization effect, suggesting that the RTIL molecularly mixed with the chitosan. Chitosan hydrogels containing only RTIL were prepared by dropping pure RTIL onto a fully preswollen hydrogel followed by water evaporation. This method may be a useful means for preparing air-stable swollen chitosan gels.     

Solid phases of cyclopentane: combined experimental and simulation study

The phase diagram of cyclopentane has been studied by powder neutron diffraction, providing diffraction patterns for phases I, II, and III, over a range of temperatures and pressures. The putative phase IV was not observed. The structure of the ordered phase III has been solved by single-crystal diffraction. Computational modeling reveals that there are many equienergetic ordered structures for cyclopentane within a small energy range. Molecular dynamics simulations reproduce the structures and diffraction patterns for phases I and III and also show an intermediate disordered phase, which is used to interpret phase II.     

Extended metal-atom chains with an inert second row transition metal: [Ru5(mu5-tpda)4X2] (tpda2- = tripyridyldiamido dianion, X = Cl and NCS)

EMACs (extended metal-atom chains) offer a unique platform for the exploration of metal-metal interactions. There has been significant advances on the synthesis of EMACs, such as lengthening the chains up to 11 metal atoms thus far, integrating naphthyridine moieties for tuning the charge carried at metal centers, and manipulation of metal-metal interactions. However, the metal centers in EMACs hitherto are limited to first row transition metals which are more labile than those relatively inert ones with electrons filled in the 4d and 5d shells. In this Communication, the synthesis, crystallographic, magnetic, and electrical conducting studies of [Ru5(mu5-tpda)4Cl2] and [Ru5(mu5-tpda)4(NCS)2], the first pentanuclear EMACs of second-row transition metal, are reported.