Intracellular transport of single-headed molecular motors KIF1A

Motivated by experiments on single-headed kinesin KIF1A, we develop a model of intracellular transport by interacting molecular motors. It captures explicitly not only the effects of adenosine triphosphate hydrolysis, but also the ratchet mechanism which drives individual motors. Our model accounts for the experimentally observed single-molecule properties in the low-density limit and also predicts a phase diagram that shows the influence of hydrolysis and Langmuir kinetics on the collective spatiotemporal organization of the motors. Finally, we provide experimental evidence for the existence of domain walls in our in vitro experiment with fluorescently labeled KIF1A.     

Does Solvent Influence the Ground-state Tautomeric Population of Hypericin?¶

Nuclear magnetic resonance measurements indicate that hypericin exists in the same "normal" tautomeric form irrespective of whether the solvent is dimethyl sulfoxide or tetrahydrofuran. This result is discussed in the context of previous experimental and theoretical work. It is concluded that solvent perturbations cannot induce tautomerization in hypericin.     

Figure of merit for near-velocity-matched traveling-wave modulators

We derive a relationship between the bandwidth and active length and a figure of merit for velocity- and near-velocity-matched lithium niobate traveling-wave electro-optic modulators. The figure of merit is given by the bandwidth per unit drive voltage squared and is independent of the length of the device. Alternatively, this figure of merit can be described by its inverse, which is proportional to the device's switching energy.     

Thin film stress measurement by instrumented optical fibre displacement sensor

Residual stress can adversely affect the mechanical, electronic, optical and magnetic properties of thin films. This work describes a simple stress measurement instrument based on the bending beam method together with a sensitive non-contact fibre optical displacement sensor. The fibre optical displacement sensor is interfaced to a computer and a Labview programme enables film stress to be determined from changes in the radius of curvature of the film-substrate system. The stress measurement instrument was tested for two different kinds of thin film, hard amorphous carbon nitride (CN) and soft copper (Cu) films on silicon substrates deposited by RF magnetron sputtering. Residual stress developed in 500 nm thick CN thin films deposited at substrate temperatures in the range 50-550 °C was examined and it was found that stress in CN films decreased from 0.83 to 0.44 GPa compressive with increase of substrate temperature. Residual stress was found to be tensile (121 MPa) for Cu films of thickness 1500 nm deposited at room temperature.     

Study of photophysical properties of capped CdS nanocrystals

Here, we have examined the role of capping agent on the optical properties of CdS nanoparticles by steady-state and time-resolved photoluminescence (PL) spectroscopy. The estimated particles sizes are 3.45, 2.5 and 2.39 nm for uncapped, capped with silica (SiO₂) and thiosalicylic acid (TSA), respectively. The absorption and emission spectra show a clear blue shift to shorter wavelengths in presence of TSA- and SiO₂-capped nanoparticles. It is found that the average decay time 〈τ〉 are 6.24, 4.54 and 2.84 ns for uncapped, capped with SiO₂ and TSA nanoparticles, respectively. Our analysis suggests that the hole or the electron is trapped on thiol molecule of TSA or hydroxyl group of SiO₂, then radiative recombination of the electron and hole is delayed, resulting in strong quenching of PL efficiency.     

Testing and Diagnosis of Realistic Defects in Digital Microfluidic Biochips

Microfluidics-based biochips are soon expected to revolutionize biosensing, clinical diagnostics and drug discovery. Robust off-line and on-line test techniques are required to ensure system dependability as these biochips are deployed for safety-critical applications. Due to the underlying mixed-technology and mixed-energy domains, biochips exhibit unique failure mechanisms and defects. We first relate some realistic defects to fault models and observable errors. We next set up an experiment to evaluate the manifestations of electrode-short faults. Motivated by the experimental results, we present a testing and diagnosis methodology to detect catastrophic faults and locate faulty regions. The proposed method is evaluated using a biochip performing real-life multiplexed bioassays.     

Pore-Scale Analysis of NAPL Blob Dissolution and Mobilization in Porous Media

A pore-scale analysis of nonaqueous phase liquid (NAPL) blob dissolution and mobilization in porous media was presented. Dissolution kinetics of residual NAPLs in an otherwise water-saturated porous medium was investigated by conducting micromodel experiments. Changes in residual NAPL volume were measured from recorded video images to calculate the mass transfer coefficient, K and the lumped mass transfer rate coefficient, k. The morphological characteristics of the blobs such as specific and intrinsic area were found to be independent of water flow rate except at NAPL saturations below 2%. Dissolution process was also investigated by separating the mass transfer into zones of mobile and immobile water. The fractions of total residual NAPL perimeters in contact with mobile water and immobile water were measured and their relationship to the mass transfer coefficient was discussed. In general, residual NAPLs are removed by dissolution and mobilization. Although these two mechanisms were studied individually by others, their simultaneous occurrence was not considered. Therefore, in this study, mobilization of dissolving NAPL blobs was investigated by an analysis of the forces acting on a trapped NAPL blob. A dimensional analysis was performed to quantify the residual blob mobilization in terms of dimensionless Capillary number (Ca _I). If Ca _I is equal to or greater than the trapping number defined as , then blob mobilization is expected.     

Phonons and periodons in IV–VI semiconductor superlattices

We have calculated the phonon and periodon dispersion relations in IV–VI semi-conducting bulk PbTe and SnTe and their superlattice structure. The model used here is a one-dimensional lattice which includes harmonic interactions up to second neighbours as well as on-site nonlinear electron-ion interactions at the anion site. We calculate the phonon and periodon dispersion relations in bulk and PbTe-SnTe superlattice for the transverse optic and acoustic modes using the transfer matrix method. Our analysis has predicted correct nature of the folding of acoustic and confinement of optical phonons at various frequency intervals corresponding to pass and stop bands of the superlattices.