Ratiometric FRET-based detection of DNA and micro-RNA in solution

A ratiometric method for detecting DNA oligomers in bulk solution based on Förster resonance energy transfer (FRET) is described. The two fluorescence signals (green and red), originating from Cy3 (donor, green) and Cy5 (acceptor, red) labels, are simultaneously detected from the pre-hybridized Cy3oligomerY:Cy5oligomerX system. The ratio of red to green intensities is sensitive to the presence of the single-stranded complimentary oligomer, which replaces single-stranded Cy3oligomerY in the donor:acceptor complex and perturbs the FRET. The detection scheme is generally applicable to the detection of DNA and RNA, and particularly micro-RNA. The proposed method is applicable to various double-stranded various lengths targets (manipulation of the sample preparation conditions, such as temperature, incubation time, denaturizing agent, may be needed).     

Left-sided quasi-invertible bimodules over Nakayama algebras

Bimodules over triangular Nakayama algebras that give stable equivalences of Morita type are studied here. As a consequence one obtains that every stable equivalence of Morita type between triangular Nakayama algebras is a Morita equivalence.     

Synthesis and magnetic characteristics of new tetrachloroferrates(III) with quinolinium and 4-amino-2-methylquinolinium cation. X-ray crystal structure of 4-amino-2-methylquinolinium tetrachloroferrate(III)

The crystal and molecular structure of a new 4-amino-2-methylquinolinium [4-NH₂-2-Me(QH)] salt of stoichiometry [4-NH₂-2-Me(QH)][FeCl₄] was determined. The iron cation is four coordinated by chlorine anions, and it adopts a slightly distorted tetrahedral coordination. In the structure three short intramolecular interactions can be found. A semi-infinite hydrogen bonded chain is created along the b axis. The quinoline molecules are multiply stacked along the a axis. These interactions expand the hydrogen bonded chain to the network parallel to the crystallographic (001) plane. The compound is not isostructural with [QH][FeCl₄]. Magnetic measurements of the powdered samples were carried out. Negative values of the Weiss constants as well as the intermolecular exchange parameter for both compounds, ([QH][FeCl₄] and [4-NH₂-2-Me(QH)][FeCl₄], indicate the occurrence of antiferromagnetic interactions transmitted in the crystal lattice.     

Reference materials in environmental trace organic analysis

 The paper reviews the application of reference materials (RMs) in environmental analysis of trace organic pollutants. The problems related to RM preparation, stability, use, etc. are critically discussed. Importance of analytical quality assurance and the role RMs play in the process are emphasised. Received: 18 May 1999 · Accepted: 27 December 1999     

Über die Bestimmung der Löslichkeit einiger Säuren und Salze der Oxalsäurereihe in Wasser bei verschiedenen Temperaturen

Ohne Zusammenfassung     

Direct determination of pKa values of cationic acids conjugated to heterocyclic amine N-oxides in polar aprotic and amphiprotic solvents

The applicability of the direct method of pK_a determination in the case of protonated heterocyclic amine N-oxides in a series of polar non-aqueous (aprotic and amphiprotic) solvents has been tested. The method is based on the pH determination of the non-aqueous solution of complex salt (the semiperchlorate in this case) formed by the N-oxides studied. The direct method not only provides for quick (one data point per each pK_a determined), but also relatively accurate estimates of acidic dissociation constants. It has been experimentally shown on the example of substituted pyridine N-oxides that this method is precise enough in all studied non-aqueous solvents when applied to compounds of not too low basicity (the pK_a being of the order of 5 or higher). To prove this, the pK_a values of protonated monocyclic N-oxides obtained by the direct method have been compared with those resulting from the potentiometric titration curve. The agreement between the results found by using both methods is very good in most cases, the differences being within standard deviations. Based upon this observation it can be inferred that the pK_a values of protonated bicyclic N-oxides in solvents studied determined by using the direct method can be also considered reliable, especially in the case of polar aprotic solvents.     

Solid-phase microextraction-gas chromatographic determination of volatile monoaromatic hydrocarbons in soil

Benzene, toluene, ethylbenzene, three isomers of xylene, and cumene have been isolated and enriched from soil samples by a combination of water extraction at room and elevated temperature and headspace-solid-phase microextraction before their gas chromatographic-mass spectrometric (GC-MS) determination. The conditions used for all stages of sample preparation and chromatographic analysis were optimized. Analytes sampled on a polydimethylsiloxane-coated solid-phase microextraction fiber were thermally desorbed in the split/splitless injector of a gas chromatograph (GC) coupled with a mass spectrometer (MS). The desorption temperature was optimized. The GC separation was performed in a capillary column. Detection limits were found to be of the order of ca. 1 ng g(-1). Relative recoveries of the analytes from soils were found to be highly dependent on soil organic-matter content and on compound identity; they ranged from ca 92 to 96% for sandy soil (extraction at room temperature) and from ca 27 to 55% for peaty soil (extraction at elevated temperature). A few real-world soil samples were analyzed; the individual monoaromatic hydrocarbon content ranged from below detection limits to 6.4 ng g(-1) for benzene and 8.1 for the total of p- + m-xylene.     

Sensitive spectrophotometric determination of vanadium with 2-(5-bromo-2-pyridylazo)-5-diethyl-aminophenol (5-Br-PADAP)

A new sensitive and highly selective method is described for the spectrophotometric determination of microgram amounts of vanadium(V). First, vanadium is isolated by extraction withN-benzoyl-N-phenylhydroxylamine (BPHA) in chloroform from about 4M hydrochloric acid medium. Then, chloroform is evaporated and the residue mineralized with mixture of cone. perchloric and nitric acid. Finally, a colour reaction of vanadium(V) separated with 2-(5-bromo-2-pyridylazo)-5-diethylaminophenol (5-Br-PADAP) in an acetate buffer (pH 4.5) gives a molar absorptivity of 5.48×10⁴l·mol^–1·cm^–1 at 585 nm. The proposed method was applied for the determination of traces of vanadium in aluminium samples. The results obtained show a good precision and accuracy of the method.     

Tailoring polymers through interplay of ligands within precatalysts: 8‐(Nitro/benzhydryl‐arylimino)‐7,7‐dimethyl‐5,6‐dihydroquinolylnickel halides in ethylene polymerization

A series of 8‐(nitro/benzhydryl‐substituted arylimino)‐7,7‐dimethyl‐5,6‐dihydroquinolines and the corresponding nickel halide complexes were synthesized and characterized. Molecular structures of representative nickel complexes were determined by single crystal X‐ray diffraction, showing the dinuclear dimers with distorted square‐pyramidal geometry around the nickel center. The binding energies determined by X‐ray photoelectron spectroscopy (XPS) indicate the effective coordination between the sp²‐nitrogen and nickel atoms as well as the influence of both the halogen ligands and the substituents within dihydroquinolines on the strength of the Ni? N bond. Ethylene polymerization with the nickel precatalysts in presence of either methylaluminoxane or diethylaluminum chloride was explored in detail. For the complexes containing the nitro substituent within the organic ligand, the catalytic activity is inversely proportional to the electron density around the nickel core determined by XPS; such phenomenon is consistent with the conclusion of the computational study stating that the activity of precatalysts is correlated with the net charge on the metal center. In the polymerization process, unimodal and branched polyethylenes containing vinyl or vinylene groups were obtained. The nickel precatalysts bearing bulky benzhydryl within the organic ligand as well as bromide rather than chloride attached to the nickel atom produce polymers with relatively large amount of vinylene groups. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55 , 2071–2083     

Achieving branched polyethylene waxes by aryliminocycloocta[b]pyridylnickel precatalysts: Synthesis,characterization, and ethylene polymerization

Cycloocta[b ]pyridin‐10‐one was prepared to form the corresponding imino derivatives, which then reacted with (DME)NiBr₂ to form 10‐aryliminocycloocta[b ]pyridylnickel bromides ( Ni1 – Ni5 ). The new compounds were characterized by means of FT‐IR spectroscopy as well as elemental analysis and the organic ligands were also analyzed by the NMR measurements. Furthermore, the molecular structure of a representative complex Ni3 was determined by the single crystal X‐ray diffraction, indicating the distorted tetrahedral geometry around the nickel atom. Upon the activation with either methylaluminoxane (MAO) or diethylaluminium chloride (Et₂AlCl), the title nickel complexes exhibited high activity in ethylene polymerization and produced polyethylene of low molecular weight (1.43–6.78 kg mol^?1) and low dispersity (1.7–2.4), which suggests a single‐site catalytic system. More importantly, the microstructure of the resultant polyethylene (especially degree of branching) and certain physical properties, such as T _m values, can easily be modulated by selecting the proper substituents within the ligands and adjusting the polymerization conditions. This finding demonstrates that it is plausible to use a single catalyst for synthesizing different types of polyethylene on demand.10‐Aryliminocycloocta[b ]pyridylnickel bromides ( Ni1–Ni5 ), upon activation with either MAO or Et₂AlCl, exhibited high activity towards ethylene polymerization and produced polyethylenes with low molecular weight (1.43–6.78 kg mol^?1) and low dispersity (1.7–2.4). © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55 , 2601–2610