Reaction of acylaminocyanoesters with 2,4-bis (4-methoxyphenyl)-1,3,2,4-dithiadiphosphetane 2,4-disulfide leading to substituted aminothiazoles. Crysta

2-Acylamino-2-cyanoacetic acid ethyl esters $\text{2a-c}$ react with 2,4-bis (4-methoxyphenyl)-1, 3, 2, 4-dithiadiphosphetane 2,4-disulfide $\text{1}$ in refluxing benzene with formation of 2-alkyl(aryl)-5-aminothiazole-4-carboxylic acid ethyl esters $\text{3a-c}$. Structure $\text{3}$ was established by spectroscopic means and an X ray crystallographic investigation of $\text{3a}$. X-Ray analysis revealed that the thiazole ring, exocyclic nitrogen and carbonyl group forming a hydrogen-bonded cycle are nearly coplanar. A resonance interaction is manifested by distinctly shortened /1.447 (3)/ C_(carbonyl)-C_(thiazole) distance.     

Adsorption of acetone on the mercury electrode from H2O+(CH3)2CO+HCl solutions

The adsorption of acetone on a mercury electrode from (CH₃)₂CO+H₂O+HCl solutions has been studied using a thermodynamically rigorous procedure. The chemical potential of the supporting electrolyte has been kept constant by using the concentrations corresponding to the constant e.m.f. of the cell with electrodes reversible to each of the ions in the solutions. It is suggested that the molecule is to some extent oriented with the hydrocarbon part towards mercury. The composition of the surface layer has been calculated.     

Determination of silver in copper ores by atomic-absorption spectrophotometry after extraction separation with triphenylphosphine

Summary A procedure is proposed for determination of small amounts of silver in copper ores and processed products. The samples are dissolved in a Teflon bomb in a mixture of hydrofluoric and nitric acids, then evaporated in the presence of nitric and boric acids. Silver is extracted from the sample solution with a solution of triphenylphosphine in methyl isobutyl ketone, then determined by atomic-absorption spectrophotometry. The method is precise and accurate. The relative standard deviation for a silver content of 10^–4% is about 4%.

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Zusammenfassung Ein Verfahren zur Bestimmung kleiner Mengen Silber in Kupfererzen und daraus hergestellten Produkten wurde vorgeschlagen. Die Proben werden in einer Teflonbombe in einem Gemisch aus Flußsäure und Salpetersäure gelöst und dann in Gegenwart von Salpetersäure und Borsäure eingeengt. Das Silber wird mit Triphenylphosphin, gelöst in Isobutylmethylketon, aus der Probelösung extrahiert und dann mit Hilfe der AAS bestimmt. Das Verfahren ist genau, die relative Standardabweichung beträgt bei einem Silbergehalt von 10^–4% ungefähr 4%.

     

Thermal stability study of the protease inhibitors

A thermal and kinetic analysis of two protease inhibitors: nelfinavir mesylate and atazanavir sulfate, were carried out to find their thermal stability. DSC curves of both drugs showed exothermic transition. This observed process resulted in two steps. Obtained apparent activation energy pointed at low stability of studied protease inhibitors in water solutions.     

Stability and nature of complexes of the type MCl+ in aqueous solution (M=Mn,Co, Ni,and Zn)

Equilibrium constants have been determined both potentiometrically and spectrophotometrically for reactions of the type M²⁺+Cl^??MCl⁺ using aqueous solutions of the corresponding metal perchlorates as the reaction media (M=Mn, Co, Ni, and Zn). The variation in the quotient of the activity coefficients of these reactions with increasing molality of the reaction medium has been found to be approximately the same for the CuCl⁺ (previously studied), MnCl⁺, and ZnCl⁺ complexes, while a different dependence is observed for the CoCl⁺ and NiCl⁺ complexes. The results are interpreted as indicating equilibrium coexistence of the [MCl(OH₂)₅]⁺ and {[M(OH₂)₆]Cl}⁺ species in the latter two cases. Approximate values of the corresponding equilibrium constants are estimated in addition to the derived overall thermodynamic stability constants of the MCl⁺ formal complexes. The latter are found to follow a partly inverted Irving-Williams series, the fact being accountable in terms of the ligand field stabilization energy.     

Structure and UV-Vis spectroscopy of nitrosylthiolatoferrate mononuclear complexes

Density functional calculations for the [(RS)_xFe(NO)_4−x]⁻ (R=CH₃) compounds are carried out using the DFT method with the B3LYP functional. The results can be verified by the experimental data only in the case of the [(RS)₂Fe(NO)₂]⁻ complex. The experimentally characterised molecular structure of [(RS)₂Fe(NO)₂]⁻ (where (RS)₂=(SCH₂CH₂NMeCH₂CH₂CH₂NMeCH₂CH₂S) is properly reproduced by the RB3LYP method. The discrepancy between the calculated spin densities with the integral spin observed experimentally is interpreted in terms of antiferromagnetic coupling between the Fe(III) centre and the NO⁻ ligands. The theoretical analysis gives a good account of some properties observed in these compounds. In particular, the electronic spectrum calculated by the TDDFT method for [(CH₃S)₂Fe(NO)₂]⁻ is similar in shape to the experimental one, although is hypsochromically shifted. The LLCT (S_π→π^*_NO), LMCT (S_π→d) or (π^*_NO→d+S_π→d) and MLCT (d→π^*_NO) transitions are mostly responsible for absorption of the [(RS)_xFe(NO)_4−x]⁻ complexes within UV-Vis. The chemical reactivity of [(RS)₂Fe(NO)₂]⁻ is interpreted basing on the calculated effect of a polar solvent on the ligand polarity and on the character of the HOMO and LUMO orbitals.     

Highly diastereoselective Henry reaction of nitro compounds with chiral derivatives of glyoxylic acid

N-Glyoxyloyl-(2R)-bornane-10,2-sultam and (1R)-8-phenylmenthyl glyoxylate react stereoselectively with simple nitro compounds giving diastereoisomeric nitroalcohols with high asymmetric induction. N-Glyoxyloyl-(2R)-bornane-10,2-sultam 1a is shown to be a highly efficient chiral inducer, superior to (1R)-8-phenylmenthyl glyoxylate 1b. In all cases, the absolute (2S) configuration at the center bearing the hydroxy group and the relative syn configuration for the major diastereoisomers were determined.     

Multiple protonation equilibria in electrostatics of protein-protein binding

All proteins contain groups capable of exchanging protons with their environment. We present here an approach, based on a rigorous thermodynamic cycle and the partition functions for energy levels characterizing protonation states of the associating proteins and their complex, to compute the electrostatic pH-dependent contribution to the free energy of protein-protein binding. The computed electrostatic binding free energies include the pH of the solution as the variable of state, mutual "polarization" of associating proteins reflected as changes in the distribution of their protonation states upon binding and fluctuations between available protonation states. The only fixed property of both proteins is the conformation; the structure of the monomers is kept in the same conformation as they have in the complex structure. As a reference, we use the electrostatic binding free energies obtained from the traditional Poisson-Boltzmann model, computed for a single macromolecular conformation fixed in a given protonation state, appropriate for given solution conditions. The new approach was tested for 12 protein-protein complexes. It is shown that explicit inclusion of protonation degrees of freedom might lead to a substantially different estimation of the electrostatic contribution to the binding free energy than that based on the traditional Poisson-Boltzmann model. This has important implications for the balancing of different contributions to the energetics of protein-protein binding and other related problems, for example, the choice of protein models for Brownian dynamics simulations of their association. Our procedure can be generalized to include conformational degrees of freedom by combining it with molecular dynamics simulations at constant pH. Unfortunately, in practice, a prohibitive factor is an enormous requirement for computer time and power. However, there may be some hope for solving this problem by combining existing constant pH molecular dynamics algorithms with so-called accelerated molecular dynamics algorithms.     

A locked derivative of 8‐aza‐7‐deazaadenosine

The title compound [systematic name: (1S,3S,4R,7S)‐3‐(4‐amino‐1H‐pyrazolo[3,4‐d]pyrimidin‐1‐yl)‐1‐hydroxymethyl‐2,5‐dioxabicyclo[2.2.1]heptan‐7‐ol], C₁₁H₁₃N₅O₄, belongs to a family of nucleosides with modifications in both the sugar and nucleobase moieties: these modifications are known to increase the thermodynamic stability of DNA and RNA duplexes. There are two symmetry‐independent molecules in the asymmetric unit that differ significantly in conformation, and both exhibit a high‐anti conformation about the N‐glycosidic bond, with χ torsion angles of −85.4 (3) and −87.4 (3)°. The sugar C atom attached to the nucleobase N atom is −0.201 (4) and 0.209 (4) Å from the 8‐aza‐7‐deazaadenine skeleton plane in the two molecules. The molecules are assembled into layers via hydrogen bonds and π–π stacking interactions between the modified nucleobases.     

Temperature-programmed gas chromatography linear retention indices of all C4-C30 monomethylalkanes on methylsilicone OV-1 stationary phase. Contribution towards a better understanding of volatile organic compounds in exhaled breath

Monomethylated alkanes have been proposed to be contained in exhaled breath, their concentration pattern serving for identification of lung carcinoma, breast carcinoma and rejection of foreign tissue after heart transplant rejection. Improving the accuracy of identification for monomethylated alkanes will enhance work on their biochemical background which presently is unknown. The programmed temperature linear retention indices of all 196 C(4)-C(30) monomethylalkanes on OV-1 stationary phase were measured with an average repeatability of +/-0.07 index units (i.u.). The mixture of C(9)-C(30) monomethylalkanes was prepared by methylene insertion reaction to C(8)-C(29)n-alkanes mixture. The preliminary identification of monomethylalkanes was performed on the basis of the dependence of homomorphy factors on the number of carbon atoms of individual homologous series of monomethylalkanes (retention indices extrapolated with s=0.15 i.u.). The prediction of retention of isomers with new position of methyl group beginning at higher carbon atoms number, as well as for second, third, fourth, etc., member of homologous series allowed the dependence H(P)=f(C(n)) for first, second, third, etc., members of beginning homologous of monomethylalkane series (retention indices extrapolated with s=0.17 i.u.). The identification was confirmed by mass spectrometry. All gas chromatographic unseparated monomethylalkane isomers with methyl-group near the middle of molecule carbon chain were resoluted by mass spectrometric deconvolution. Obtained regular dependences H(P)=f(C(n)) allow precise retention prediction of monomethylalkanes C(30).