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Tong Ge Yonghua Lu Kecheng Lu Yunhai Wang Xin Liu Zhanglin Cheng Yi Chen Oliver Deussen Baoquan Chen 《显形杂志》2020,23(3):523-537
In the field of evolutionary genome analysis, biologists seek to identify important genes or chromosome regions by comparing phylogenetic trees and analyzing the mutation at which locus might affect phenotypic traits. Unfortunately, the tree comparison and accompanying analysis are often performed manually. In this paper, we characterize the workflow of evolutionary genome analysis and present a task analysis for the fundamental questions asked by biologists during the analysis procedure. We propose two algorithms to enable quantitative tree comparison. One is to measure the differences between corresponding leaf nodes on two trees, and the other is to compute the classification inconsistency of each leaf node by comparing tree structure with a given biological classification. Configuring with the obtained difference and inconsistency, we present a visual analysis system, visual comparison of phylogenetic trees for evolutionary genome analysis, which not only enables biologists to intuitively explore trees but also identify locus which affects their traits by comparing SNP variants of selected leaf nodes. We conclude with case studies from two biologists who used our system to augment their previous manual analysis workflow and demonstrate that our system can reveal more insight. 相似文献
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Tong Liu Zhen-Fei Zheng Yu Zhang Yu-Liang Fang Chui-Ping Yang 《Frontiers of Physics》2020,15(2):21603-37
We propose a method for transferring quantum entangled states of two photonic cat-state qubits(cqubits)from two microwave cavities to the other two microwave cavities.This proposal is realized by using four microwave cavities coupled to a superconducting flux qutrit.Because of using four cavities with different frequencies,the inter-cavity crosstalk is significantly reduced.Since only one coupler qutrit is used,the circuit resource is minimized.The entanglement transfer is completed with a singlestep operation only,thus this proposal is quite simple.The third energy level of the coupler qutrit is not populated during the state transfer,therefore decoherence from the higher energy level is greatly suppressed.Our numerical simulations show that high-fidelity transfer of two-cqubit entangled states from two transmission line resonators to the other two transmission line resonators is feasible with current circuit QED technology.This proposal is universal and can be applied to accomplish the same task in a wide range of physical systems,such as four microwave or optical cavities,which are coupled to a natural or artificial three-level atom. 相似文献
54.
Nucleon effective mass splitting and density-dependent symmetry energy effects on elliptic flow in heavy ion collisions at E_(lab)= 0.09 ~ 1.5 GeV/nucleon 下载免费PDF全文
Luyao Tong Pengcheng Li Fupeng Li Yongjia Wang Qingfeng Li Fanxin Liu 《中国物理C(英文版)》2020,44(7):074103-074103-8
By incorporating an iso spin-dependent form of the momentum-dependent potential in the ultra-relativistic quantum molecular dynamics(UrQMD) model,we systematically investigate effects of the neutron-proton effective mass splitting m*_(n-p)=m*_n-m*_p/m and the density-dependent nuclear symmetry energy E_(sym)(ρ) on the elliptic flow v_2 in~(197)Au+~(197) Au collisions at beam energies from 0.09 to 1.5 GeV/nucleon.It is found that at higher beam energies(≥0.25 GeV/nucleon) with the approximately 75 MeV difference in slopes of the two different E_(sym)(ρ),and the variation of m*_(n-p) ranging from-0.03 to 0.03 at saturation density with isospin asymmetry δ=(ρ_n-ρ_p)/ρ-0.2,the E_(sym)(ρ) has a stronger influence on the difference in v_2 between neutrons and protons,i.e.,v_2~n-v_2~p,than m*_(n-p) has.Meanwhile,at lower beam energies(≤0.25 GeV/nucleon),v_2~n-v_2~p is sensitive to both the E_(sym)(ρ) and the m*_(n-p).Moreover,the influence of m*_(n-p) on v_2~n-v_2~p is more evident with the parameters of this study when using the soft,rather than stiff,symmetry energy. 相似文献
55.
The acoustical insertion losses produced by a balcony-like structure in front of a window are examined experimentally. The results suggest that the balcony ceiling is the most appropriate location for the installation of artificial sound absorption for the purpose of improving the broadband insertion loss, while the side walls are found to be the second best. Results also indicate that the acoustic modes of the balcony opening and the balcony cavity resonance in a direction normal to the window could have a great impact on the one-third octave band insertion losses. The maximum broadband road traffic noise insertion loss achieved is about 7 dB. 相似文献
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讨论了PIC-MCC方法的基本原理以及在UNIPIC软件中的编程实现,并用该软件模拟了充填不同种类气体在不同气压下相对论返波管的气体电离过程,讨论了所产生的等离子体对电子束的传输以及波束相互作用的影响.给出了返波管输出功率、频率和起振时间随气体种类和气压等参数的变化情况.模拟结果表明,电离产生的阳离子是返波管性能改善的原因,而腔内滞留的低能电子是破坏返波管振荡而引起脉宽缩短的重要因素.
关键词:
蒙特卡罗碰撞
粒子模拟
高功率微波
相对论返波管 相似文献
59.
A simple scheme of switchable dual-wavelength passively mode-locked fiber laser is demonstrated. The laser can be flexibly switched among different mode-locked states simply by tuning the cavity loss while keeping all the other cavity parameters fixed. As the cavity loss increases, the mode-locked fiber laser operates at the long-wavelength, dual-wavelength, and short-wavelength states, successively. In addition, these states can be conveniently switched without losing the mode-locked operation and the switching process is reversible as the cavity loss decreases. The mechanism is qualitatively explained by the balance between the fiber gain and the cavity loss. 相似文献
60.
针对混沌时间序列的预测问题,考虑到单一核函数的最小二乘支持向量机无法明显提高预测精度,提出了一种组合核函数的最小二乘支持向量机预测模型,模型中采用多项式函数与径向基函数组合构建核函数.同时,还对遗传算法进行了改进,使之具有更快的收敛速度和更高的精度,改进的遗传算法适用于解决预测模型中的参数优化问题.通过典型的Lorenz时间序列、Mackey-Glass时间序列、太阳黑子数时间序列以及具有混沌特性的网络流量时间序列对该模型进行了验证.仿真结果表明所提出的模型是有效的. 相似文献