Surface-initiated growth of poly d(A-T) by Taq DNA polymerase

In this paper, we report surface-initiated d(A-T) polymerization by Taq DNA polymerase as a method for constructing DNA-tethered surfaces using an enzyme. The enzymatic polymerization was conducted successfully via two steps: tethering of oligo d(A-T)s onto the surface presenting carboxylic acids by amide coupling and surface-initiated polymerization using Taq DNA polymerase. In this enzymatic polymerization process, the design and construction of carboxylic acid-presenting surfaces were found to be an important factor: DNA growth did not occur on the gold surface coated only with the self-assembled monolayer (SAM) of 16-mercaptohexadecanoic acid (MHDA), but effectively proceeded on the surfaces presenting mixed SAMs of MHDA and 1-pentadecanethiol. The coupling of oligo d(A-T)s and the subsequent DNA polymerization reaction were characterized by polarized infrared external reflectance spectroscopy, ellipsometry, X-ray photoelectron spectroscopy, and atomic force microscopy.     

Syntheses of 1beta-methylcarbapenems bearing 5-methyl-4-hydroxypyrrolidinone

A new series of 1beta-methylcarbapenems 1a-d bearing 5-methyl-4-mercaptopyrrolidinone rings has been prepared and evaluated for in vitro antibacterial activity and pharmacokinetic parameters. Most compounds showed excellent antibacterial activity and high stability to dehydropeptidase-1. We have synthesized optically active 5-methyl-4-hydroxypyrrolidinones from enantiomerically pure aziridine esters.     

Self-assembling structures of long-chain phenyl glucoside influenced by the introduction of double bonds

Four long-chain phenyl glucoside amphiphiles possessing a saturated or unsaturated long alkyl chain group as the self-assembling unit of a highly organized molecular architecture were synthesized. Their self-assembling properties were investigated by EF-TEM, SEM, CD, FT-IR, and XRD. Compound 2 possessing one double bond in the lipophilic portion showed twisted helical fibers, which formed a bilayered structure with a 3.59 nm period, while compound 3 showed the helical ribbons and left-handed nanotubular structures with 150-200 nm inner diameters and ca. 20 nm of wall. Very interestingly, compound 4 possessing three double bonds showed a nanotubular structure with ca. 70 nm of inner diameter through a helical ribbon, which formed a loose bilayered structure with 4.62 nm. These results indicate that self-assembling properties strongly depend on the number of cis double bonds.     

Stoichiometric and catalytic deuterium and tritium labeling of "unactivated" organic substrates with cationic Ir(III) complexes

[reaction: see text] Ir(III) complex [Cp(PMe(3))IrMe(CH(2)Cl(2))][BAr(f)] (1) was used to introduce deuterium stoichiometrically into substituted naphthalene/benzene templates and several "drug-like" entities. The exchange process is tolerant of a wide array of functional groups. Labeling of warfarin using subatmospheric pressures of T(2) led to specific activities and total activities rivaling current functional group directed tritium labeling methods. When paired with the appropriate deuterium donor, Cp(PMe(3))Ir(H(3))OTf (4) was found to deuterate a number of organic compounds catalytically.     

Ultrafast energy-electron transfer cascade in a multichromophoric light-harvesting molecular square

A molecular square with dimensions of about 4 nm, incorporating sixteen pyrene chromophores attached to four ditopic bay-functionalized perylene bisimide chromophores, has been synthesized by coordination to four Pt(II) phosphine corner units and fully characterized via NMR spectroscopy and ESI-FTICR mass spectrometry. Steady-state and time-resolved emission as well as femtosecond transient absorption studies reveal the presence of a highly efficient (>90%) and fast photoinduced energy transfer (k(en) approximately equal to 5.0 x 10(9) s(-1)) from the pyrene to the perylene bisimide chromophores and a very fast and efficient electron transfer (>94%, k(et) approximately equal to 5 x 10(11) up to 43 x 10(11) s(-1)). Spectrotemporal parametrization indicates upper excited-state electron-transfer processes, various energy and electron-transfer pathways, and chromophoric heterogeneity. Temperature-dependent time-resolved emission spectroscopy has shown that the acceptor emission lifetime increases with decreasing temperature from which an electron-transfer barrier is obtained. The extremely fast electron-transfer processes (substantially faster and more efficient than in the free ligand) that are normally only observed in solid materials, together with the closely packed structure of 20 chromophoric units, indicate that we can consider the molecular square as a monodisperse nanoaggregate: a molecularly defined ensemble of chromophores that partly behaves like a solid material.     

Micropatterning of semicrystalline poly(vinylidene fluoride) (PVDF) solutions

Micropatterning of a semicrystalline poly(vinylidene fluoride) (PVDF) solution was performed by a temperature controlled capillary micromolding where the rate of solvent evaporation was controlled by substrate temperature. In order to choose proper solvents for micropatterning, we have investigated the solubility of PVDF in various organic solvents and crystal structures of the PVDF bulk films cast from the solvents. The films prepared from the polar solvents such as dimethylformamide (DMF), dimethyl sulfoxide (DMSO) dominantly showed γ type crystals regardless of preparation temperature, while the films from tetrahydrofuran (THF) exhibit α type crystals and the ones from acetone and methyl ethyl ketone (MEK) show the characteristics of both α- and γ-PVDF. The quality of micropatterns and shapes of the PVDF crystals in the patterns significantly depend on solvent evaporation rates. Micropatterns of PVDF formed in DMF at 120 °C showed the best uniformity in shape. Crystals of the PVDF nucleated at the center regions of microchannels tended to be elongated with the b-axis of γ-PVDF crystals along the channels as the concentration of the solution decreased. In contrast, crystals nucleated at the corner regions of the channels had their b-axis oriented perpendicular to the channels. In line patterns with the width of 2 μm, the corner nucleated crystals were dominant and a resulting bamboo-like crystalline microstructure was observed in which the b-axis of γ-PVDF crystals, fast growth direction, is oriented normal to the microchannels. The crystal structures of the bulk films and the micropatterns were characterized by X-ray diffractometer, Fourier transform infrared spectroscope in Attenuated Total Reflection mode, Polarized Optical and Scanning Electron Microscope.     

Total synthesis and absolute stereochemistry of (9R,10S)-epoxyheptadecan-4,6-diyn-3-one, a diacylglycerol acyltransferase inhibitor from Panax ginseng

Asymmetric synthesis of four possible stereoisomers of (9,10)-epoxyheptadecan-4,6-diyn-3-one was accomplished, and the absolute configuration of the naturally occurring (9R,10S)-epoxyheptadecan-4,6-diyn-3-one (1) was elucidated.     

Infrared-visible and visible-visible double resonance spectroscopy of 1-hydroxy-9,10-anthraquinone-(H2O)n (n=1,2) complexes

The structures of hydrated 1-hydroxyanthraquinone complexes (1-HAQ), 1-HAQ(H2O)n=1,2, with intramolecular and intermolecular hydrogen bonding interactions were studied using laser spectroscopic methods such as laser induced fluorescence, fluorescence-detected infrared, infrared-visible hole burning, and visible-visible hole burning spectroscopy. In the 1:1 complex 1-HAQ(H2O)1, the water binds to the free carbonyl group of 1-HAQ not associated with intramolecular hydrogen bond. The second water in the 1:2 complex, 1-HAQ(H2O)2, binds to the first water of the 1:1 complex rather than other hydrogen bonding sites of 1-HAQ. A pair of two geometric isomers was produced in a supersonic jet for each of the 1:1 and 1:2 complexes. Both isomers of each complex have the same vibrational spectra in the region of the OH stretching vibration of water, but have different energies for the 0-0 band of vibronic transition due to the asymmetry of the two phenyl rings in 1-HAQ. The 0-0 bands for all four species of 1-HAQ(H2O)n=1,2 were unambiguously assigned by comparing with the results of ab initio calculations, which yielded the structures, vibrational frequencies, and relative energies of the frontier molecular orbitals.     

Intraframework potential energy function of zeolites

Potential energy functions suitable for the (Cs_1–xNa_xT₂O₄)-A type zeolite family were obtained from the known crystal structure of Cs₇Na₅-A zeolite. Using these potential functions, several other crystal structures in these family were obtained by molecular mechanical calculations. The activation energy - to -cage transmission of the H₂ molecule and the void volume of Cs₃Na₉-A zeolite were calculated.     

Morphology and transport properties of protons and methanol through partially sulfonated block copolymers

The morphological changes with different compositions of casting solvents in the membranes of sulfonated polystyrene-block-poly(ethylene-ran-butylene)-block-polystyrene (SEBS) were investigated with small-angle X-ray scattering (SAXS) and transmission electron microscope (TEM). Using the single solvent of tetrahydrofuran (THF) and the solvent mixtures of methanol/THF with different compositions, the casting polymer solutions were prepared for the membrane fabrication. The proton conductivity and the methanol permeability of membranes were measured, and the effect of morphological changes on the casting solvents was discussed through Flory–Huggins theory. It was found that the sulfonated SEBS membranes were transformed from well ordered lamellar to disordered co-continuous structure and the morphological difference caused abrupt enhancement in the proton conductivity and the methanol permeability as the concentration of methanol in the mixed solvents (MeOH/THF) increased.