Synthesis and characterization of a fluorescent adenosine derivative for detection of intermolecular RNA G-quadruplexes

We synthesized a fluorescent adenosine derivative, rA^py, as a probe to study RNA structural transitions, in particular the intermolecular G-quadruplex formation. rA^py was incorporated into the dangling positions of guanine-rich oligonucleotides, which under physiological conditions undergo π-stacking on top of each other exhibiting a strong emission signal in their G-quadruplex conformation, but not in their single-stranded state.     

Nonlinear optical co-crystal of analogous polyene chromophores with tailored physical properties

A new organic nonlinear optical co-crystal based on analogous configurationally locked polyene chromophores with noncentrosymmetric packing exhibits a large macroscopic second-order nonlinearity with tailored physical properties.     

Photoluminescence properties of a perfluorinated supramolecular columnar liquid crystal with a pyrene core: effects of the ordering and orientation of the columns

We investigated the effects of the alignment and ordering of pi-conjugated perfluorinated dendrimers containing pyrene moieties in their cores on their photoluminescence (PL) properties. The pyrene molecules are stacked in columns surrounded by aromatic and semifluorinated tails, which can be conjugated and act as chromophores. Polarized light microscopy (PLM), cross-sectional scanning electron microscopy (SEM), and atomic force microscopy (AFM) results show that variation of the cooling rate of the dendrimers produces variation in their orientation and ordering: Slow cooling (approximately <0.5 degrees C/min) of the isotropic melt in a sandwich glass cell results in a high degree of ordering and the vertical alignment of the columns on the substrate, in which the stacked pyrene molecules are oriented parallel to the surface over large areas. In contrast, rapid cooling (approximately >10 degrees C/min) leads to the planar alignment of the columns with significant disorder on the same substrate. UV-vis, PL, SEM, and AFM results show that the quenched columns with a planar orientation produce a broad emission band and a second weak shoulder, which indicates the presence of isolated molecules. However, the high degree of ordering of the columns with a vertical alignment produces a red-shift in the PL spectrum, with very few isolated molecules. By comparing two films with different alignments but similar ordering, we show that the ordering of this material has a greater influence on the PL spectrum than the alignment. This effect of the ordering of the columns was further verified by comparing the optical properties of the isolated dendrimers with those of small pi-conjugated molecules in solution and solid films.     

Solid-supported [2+2+2] cyclotrimerizations

The transition-metal-catalyzed [2+2+2] cyclotrimerization of a diyne and an alkyne provides a convergent route to highly-substituted aromatic rings. This reaction possesses distinct drawbacks, especially low chemo- and regioselectivities, which hamper its application in combinatorial synthesis. These problems have been solved by the development of solid-supported [2+2+2]-cycloaddition reactions. If conducted on a solid-support, this reaction enables rapid combinatorial access to diverse sets of carbo- and heterocyclic small-molecule arrays. The scope of this methodology has been investigated by examining different immobilization strategies, different diyne precursors, and a variety of functionalized alkyne reaction partners. Overall, isoindoline, phthalan, and indan libraries were assembled in good to excellent yields and with high purities.     

pH-responsive movement of cucurbit[7]uril in a diblock polypseudorotaxane containing dimethyl beta-cyclodextrin and cucurbit[7]uril

[Structure: see text] A polypseudorotaxane consisting of cucurbit[7]uril (CB[7])/N,N'-(3-phenylenebis(methylene)dipropargylamine (PMPA), [2]pseudorotaxane, and 2,6-O-dimethyl beta-cyclodextrin (DM-beta-CD)/alpha,omega-bisazidopropylene glycol 400 [2]pseudorotaxane was synthesized using the "click" reaction. The polypseudorotaxane structure was maintained in aqueous solution over a wide range of pH values with the DM-beta-CD units contributing to increased solubilization of the polypseudorotaxane without dethreading. The pH-responsive movement of the CB[7] units in the polypseudorotaxane was also observed.     

Preparation and characterization of the antibacterial Cu nanoparticle formed on the surface of SiO2 nanoparticles

Cu deposition on the surface of spherical SiO2 nanoparticles was studied to achieve the hybrid structure of Cu-SiO2 nanocomposite. SiO2 nanoparticles served as seeds for continuous Cu metal deposition. The chemical structure and morphology were studied with X-ray photoelectron spectroscopy (XPS), scanning electron microscope energy dispersive X-ray (SEM-EDX), and a transmission electron microscope (TEM). The antibacterial properties of the Cu-SiO2 nanocomposite were examined with disk diffusion assays. The homogeneously formed Cu nanoparticles on the surface of SiO2 nanoparticles without aggregation of Cu nanoparticles showed excellent antibacterial ability.     

Microwave-assisted synthesis of (η-arene)tricarbonylchromium complexes

We have undertaken a study of the microwave-assisted synthesis of (η⁶-arene)tricarbonylchromium complexes. Under microwave irradiation, the reactions of hexacarbonylchromium with arenes gave high yields of (η⁶-arene)chromium tricarbonyl complexes.     

Synthesis,characterization and metal ion complexation and extraction capabilities of calix[4]arene Schiff base compounds

The syntheses, characterization and metal ion complexation and extraction capabilities of six new calix[4]arene Schiff base compounds, 5–10, are reported. The preparation of the compounds was achieved by the condensation of 5,17-diamino-11,23-di-tert-butyl-25,27-di-n-butoxy-26,28-dihydroxycalix[4]arene with the appropriate aldehyde (5-bromosalicylaldehyde for 5, 4-anisaldehyde for 6, 4-(dimethylamino)benzaldehyde for 7, 9-anthracenecarboxaldehyde for 8, 1-pyrenecarboxaldehyde for 9, and 9-fluorenecarboxaldehyde for 10) in refluxing ethanol. The compounds were characterized by ¹H and ¹³C NMR spectroscopy, IR spectroscopy, high-resolution mass spectrometry and elemental analysis. The X-ray crystal structures of 7, 8 and 9 (as dichloromethane solvates) revealed that the calixarene molecules adopt H-bond stabilized, distorted-cone conformations and form centrosymmetric dimers in the solid state. Compounds 5–10 did not form host–guest complexes with NEt₄[(bdt)MoO₂(OSiPh₃)] (bdt^2–=benzene-1,2-dithiolate), a potential precursor for biologically relevant oxosulfido-Mo(VI/V) enzyme models; such host–guest complexes have the potential to stabilize these sought-after but highly reactive model compounds. In addition, the capabilities of 5–10 to extract selected metal ions (Ni²⁺, Co²⁺, Cu²⁺, Zn²⁺, Ag⁺, Pb²⁺, Cd²⁺ and Hg²⁺) from an aqueous into an organic phase have been assessed by picrate extraction experiments. Compound 5 displayed exceptional selectivity towards Ni²⁺, compound 7 exhibited enhanced extraction towards all of the metal ions tested and compounds 6, 9 and 10 showed very high selectivity towards Hg²⁺. On the other hand, compound 8 exhibited negligible capacity to extract any of the metal ions tested.