Cooperative motions of protein and hydration water molecules: molecular dynamics study of scytalone dehydratase

Two molecular dynamics (MD) simulations totaling 25 ns of simulation time of monomeric scytalone dehydratase (SD) were performed. The enzyme has a ligand-binding pocket containing a cone-shaped alpha+beta barrel, and the C-terminal region covers the binding pocket. Our simulations clarified the difference in protein dynamics and conformation between the liganded protein and the unliganded protein. The liganded protein held the ligand molecule tightly and the initial structure was maintained during the simulation. The unliganded protein, on the other hand, fluctuated dynamically and its structure changed largely from the initial structure. In the equilibrium state, the binding pocket was fully solvated by opening of the C-terminal region, and the protein dynamics was connected with hydration water molecules entry into and release from the binding pocket. In addition, the cooperative motions of the unliganded protein and the hydration water molecules produced the path through the protein interior for ligand binding.     

Chirality exchange from sp3 central chirality to axial chirality: benzannulation of optically active diaryl-2,2-dichlorocyclopropylmethanols to axially chiral alpha-arylnaphthalenes

Chirality exchange benzannulation of optically active (1S)-aryl(aryl')-2,2-dichlorocyclopropylmethanols (>99% ee) using TiCl4 successfully proceeded to give axially chiral (M)-alpha-arylnaphthalenes with excellent levels of stereo induction (>99% ee). This unique transformation involves the single-step chirality exchange from sp3 central chirality to axial chirality, that is, a type of excellent memory effect.     

Palladium-catalyzed hydrocarbonation of methyleneaziridines with carbon pronucleophiles

The reaction of methyleneaziridine 1 with carbon pronucleophiles (2, H-CR₃) proceeds smoothly in the presence of a palladium catalyst affording the corresponding hydrocarbonation products 5 in good to high yield.     

A direct hydrogen-1 and phosphorus-31 nuclear magnetic resonance cation solvation study of Al(ClO4)3, Ga(ClO4)3, In(ClO4)3, UO2(ClO4)2, and UO2(NO3)2 in water-acetone-dimethylsulfoxide and water-acetone-hexamethylphosphoramide mixtures

A competitive solvation study of Al(ClO₄)₃, Ga(ClO₄)₃, In(ClO₄)₃, UO₂(ClO₄)₂, and UO₂(NO₃)₂ in water-acetone-dimethylsulfoxide (DMSO) and water-acetone-hexamethylphosphoramide (HMPT) mixtures has been carried out by direct H¹ and P³¹ nuclear magnetic resonance (NMR) techniques. At low temperature, proton and ligand exchange are slow enough in these systems to permit the observation of signals for bulk and coordinated molecules of water and the organic bases (DMSO and HMPT). Both DMSO and HMPT compete effectively with water for coordination sites in the Al³⁺, Ga³⁺, and In³⁺ systems, with steric effects dominating the HMPT results. Both Al³⁺ and In³⁺ are able to bind a maximum of two to three HMPT molecules, for example. In contrast, UO²⁺ is solvated selectively by the organic molecules to the allowed maximum of 4 molecules per cation. H¹ and P³¹ NMR spectral results support the formation of only the mono-, tri-, and tetra-HMPT solvation complexes.     

Dicopper-dioxygen complex supported by asymmetric pentapyridine dinucleating ligand

A dicopper(I) complex supported by a novel asymmetric pentapyridine dinucleating ligand, consisting of tetradentate and tridentate metal-binding sites, has been synthesized and characterized. The dicopper(I) complex reacted with molecular oxygen at a low temperature to give an unprecedented mu-peroxo dicopper(II) complex presumably having a mu-eta1:eta2 binding mode, the spectroscopic features and the reactivity of which have been explored in detail.     

Synthesis of poly(ethylene glycol)‐based hydrogels and their swelling/shrinking response to molecular recognition

To synthesize the novel molecular‐ and pH‐stimulus‐responsive hydrogel, we prepared poly(ethylene glycol)‐based hydrogel containing ionic groups. We evaluated the fundamental swelling/shrinking properties of the hydrogels synthesized by various conditions. Decreasing the molecular weight of a crosslinker provided the increasing of the equilibrium swelling ratio. Also, the equilibrium swelling ratio was changed by the introduction of functional ionic monomers and its compositions. Furthermore, the swelling/shrinking behaviors of the hydrogels were affected by the environmental condition of aqueous solution, in fact the hydrogels were considerably shrunk (to one‐fifth volume) using a di‐ionic solute in the aqueous solution through the ionic interactions between the hydrogel and the solutes. Additionally, the specific shrinking to diamine compounds was also observed in response to pH change. These results clearly show the swelling/shrinking responsibility of the hydrogels toward the molecular recognitions and its pH conditions. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013, 51, 3153–3158