Accessibility and size of <Emphasis Type="Italic">Valonia</Emphasis> cellulose microfibril studied by combined deuteration/rehydrogenation and FTIR technique

We report an FTIR method to measure the accessibility and the size of cellulose microfibrils from the cell wall of Valonia ventricosa. This method is similar to the conventional deuteration technique for measuring the accessibility of cellulosic materials; however, the difference in our method is that the hydroxyl groups O2H, O3H, and O6H in the crystalline region were initially completely deuterated. The sample was then rehydrogenated by soaking in water at 25 °C, so that the OD groups on the surface were rehydrogenated. The ratio of OH to OD absorbance was used to calculate the number of surface vs. core cellulose chains in a microfibril. The obtained experimental ratio of 0.934 was consistent with the value calculated for a previously published 33 × 38 chain Valonia model (Sugiyama et al. 1984). The rehydrogenation process was further investigated by immersing the sample in water at elevated temperatures. At temperatures above 120 °C, rehydrogenation was more efficient, and the efficiency plots vs. rehydrogenation temperature showed two inflection. These points may correspond to the temperature where the cleavage of inter-chain hydrogen bonds and/or crystalline-phase transition would have been occurred.     

Estimation of dye configuration from conventional chiroptical spectra of porphyrin integrates: combination of exciton theory with Monte Carlo molecular structural simulation

Dye integrates (arrays and aggregates) are the subject of current interest in photochemical devices. However, they are in general not suitable for X-ray crystallography because of their poor crystallinity. Here, we improved a simple method of estimating dye configurations in porphyrin integrates from their visible absorption (AB) and circular dichroism (CD) spectra. For this purpose, we calculate the dipolar and optical rotatory strengths of an integrate on the basis of the exciton theory for a given porphyrin configuration, generate the theoretical AB and CD spectra of the dye integrate using a phenomenological line shape function, a Voigt function with an adjustable line width, and optimize the configuration by minimizing the square sum (S) of the difference between the observed and calculated spectra. We adopted two optimization methods to achieve a least-squares fit between the calculated and observed spectra: the Metropolis Monte Carlo (MC) method, which incorporates S into the molecular force-field energy as a constraint, and the quasi-Newton (QN) method, which numerically minimizes S and uses no molecular force field. To check the feasibility of these methods, we simulated the AB and CD spectra of Tr?ger's base and meso-meso-linked porphyrins using the QN program, then compared the dye configurations with their X-ray structures. The calculated dye configuration of Tr?ger's base porphyrin is sufficiently in agreement with that of the X-ray structure (RMSD=0.21 A for the ZnS4 center), whereas that of meso-meso-linked porphyrin was not. These results were discussed in terms of charge transfer between two porphyrins. Finally, we applied the QN and MC methods to the structural estimation of a newly prepared peptide-linked bis(porphyrin) Boc-(PorZn,S)2-OBut. The best configurations estimated by these two methods were sufficiently in agreement with each other.     

Optical Spectrogram Scope Using Time-to-Two-Dimensional Space Conversion and Interferometric Time-of-Flight Cross Correlation

We demonstrate a new tool called optical spectrogram scope for visualization of a spectrogram or a scalogram of optical ultrafast phenomena. The optical spectrogram scope is constructed on the basis of the time-to-two-dimensional-space conversion technique capable of converting a set of time-varying frequency distributions into two-dimensional spatial ones.     

Synthesis and absolute configuration of (-)-meridinol and (-)-3-epimeridinol

The first synthesis of (-)-meridinol and (-)-3-epimeridinol was accomplished from (S)-malic acid. This synthesis unambiguously established the absolute stereochemistry of meridinol.     

A Novel Affinity Capillary Electrophoresis for the Detection of Gene Mutation Using Immobilized Oligonucleotides-Polyacrylamide Conjugate

It has been found that small mutations of certain genes are the definitive origin of many heritable disorders and cancers with striking development of recent molecular biology. Such new findings have taken close-up of the importance of gene mutation assays based on the difference of DNA base sequences in diagnostic or medical field Capillary electrophoresis can be a good candidate for an ideal method on such gene analysis, because the methods can be performed with trace amount of samples, high resolution and shorter running time. We have established an effect of oligonucleotide, which was introduced onto capillary inner surface, on the recognition of an overall sequence of sample DNA fragments as an affinity ligand.     

Synthesis of Block Copolymers with a Pentasilane Core

We report a new method for the synthesis of block copolymers with a pentasilane core by the polymerization of alkyl methacrylate monomers using the pentasilyl dianion as an initiator. The polymerization proceeded with living features and yielded the corresponding block copolymers with controlled molecular weights. The amphiphilic block copolymer was obtained by the polymer reaction, and it formed sphere‐like aggregates in MeOH/H₂O solution.

     

Synthesis of benzo[h]quinoline-based neutral pentacoordinate organosilicon complexes

Reactions of 10-benzo[h]quinolyllithium with a series of organosilanes led to the formation of neutral pentacoordinate complexes. The diethynyl-substituted complex was able to be converted to di(arylethynyl)-substituted ones by the Sonogashira-Hagihara coupling reaction. Electronegative substituents shortened N-Si distances and enhanced fluorescence intensity from the complexes.     

Sesquiterpene lactone glycosides from the roots of Ferula varia

Seven new sesquiterpene lactone glycosides (1-7) were isolated from the H2O-soluble fraction from the MeOH extract of the roots of Ferula varia. Their structures were elucidated by extensive spectroscopic analyses. The absolute configurations of compounds 1 and 2 were determined by modified Mosher's method.