Click Chemistry of Melamine Dendrimers: Comparison of “Click-and-Grow” and “Grow-Then-Click” Strategies Using a Divergent Route to Diversity

Dendrimers are attractive macromolecules for a broad range of applications owing to their well-defined shapes and dimensions, highly branched and globular architectures, and opportunities for exploiting multivalency. Triazine dendrimers in particular offer advantages such as ease of synthesis, stability, well-defined spherical structure, multivalency, potential to achieve acceptable drug loadings, and low polydispersity. In this study, the potential utility of alkyne-azide “click” cycloadditions of first-, second-, and third-generation triazine dendrimers containing three or six alkynyl groups with benzyl azide was examined using copper catalysts. “Click-and-grow” and “grow-then-click” strategies were employed. For the first- and second- generation dendrimers, the desired triazole derivatives were obtained in high yields and purified by simple reprecipitation without column chromatography; however, some difficulties were observed in the preparation of third-generation dendrimers. The desired reaction proceeded under microwave irradiation as well as with simple heating. This click chemistry can be utilized for various melamine dendrimers that are fabricated with other amine linkers.     

Improved pose and affinity predictions using different protocols tailored on the basis of data availability

The D3R 2015 grand drug design challenge provided a set of blinded challenges for evaluating the applicability of our protocols for pose and affinity prediction. In the present study, we report the application of two different strategies for the two D3R protein targets HSP90 and MAP4K4. HSP90 is a well-studied target system with numerous co-crystal structures and SAR data. Furthermore the D3R HSP90 test compounds showed high structural similarity to existing HSP90 inhibitors in BindingDB. Thus, we adopted an integrated docking and scoring approach involving a combination of both pharmacophoric and heavy atom similarity alignments, local minimization and quantitative structure activity relationships modeling, resulting in the reasonable prediction of pose [with the root mean square deviation (RMSD) values of 1.75 Å for mean pose 1, 1.417 Å for the mean best pose and 1.85 Å for the mean all poses] and affinity (ROC AUC = 0.702 at 7.5 pIC50 cut-off and R = 0.45 for 180 compounds). The second protein, MAP4K4, represents a novel system with limited SAR and co-crystal structure data and little structural similarity of the D3R MAP4K4 test compounds to known MAP4K4 ligands. For this system, we implemented an exhaustive pose and affinity prediction protocol involving docking and scoring using the PLANTS software which considers side chain flexibility together with protein–ligand fingerprints analysis assisting in pose prioritization. This protocol through fares poorly in pose prediction (with the RMSD values of 4.346 Å for mean pose 1, 4.69 Å for mean best pose and 4.75 Å for mean all poses) and produced reasonable affinity prediction (AUC = 0.728 at 7.5 pIC50 cut-off and R = 0.67 for 18 compounds, ranked 1st among 80 submissions).     

Evolving Graphs by Singular Weighted Curvature

A new notion of solutions is introduced to study degenerate nonlinear parabolic equations in one space dimension whose diffusion effect is so strong at particular slopes of the unknowns that the equation is no longer a partial differential equation. By extending the theory of viscosity solutions, a comparison principle is established. For periodic continuous initial data a unique global continuous solution (periodic in space) is constructed. The theory applies to motion of interfacial curves by crystalline energy or more generally by anisotropic interfacial energy with corners when the curves are the graphs of functions. Even if the driving force term (homogeneous in space) exists, the initial-value problem is solvable for general nonadmissible continuous (periodic) initial data. (Accepted July 5, 1996)     

Structure of thiotropocin,a new sulfur-containing 7-membered antibiotic

The structure of a new antibiotic thiotropocin is described.     

Optical third-harmonic generation from some high-index glasses

Optical third-harmonic generation from some high-index glasses was investigated. The highest χ⁽³⁾ was obtained from As₂S₃ glass 2.2 × 10⁻¹² esu/ This value was 100 times higher than that of pure SiO₂ glass and comparable with that of the polymer with monomer-doping, which are known as organic materials with quite high χ⁽³⁾. From the relationship between χ⁽³⁾ and composition, sulfide glasses were found to have higher χ⁽³⁾ than oxide or semiconductor-doped oxide glasses with similar refractive indices.