Electronic structure of DNA nucleobases and their dinucleotides explored by soft X-ray spectroscopy

The electronic structures of a series of DNA nucleobases and their dinucleotides were investigated by N 1s X-ray absorption, X-ray photoemission, and resonant X-ray emission spectroscopy. Resonant X-ray emission spectra of the guanine base and its dinucleotide indicate that it has a weak structure at the lowest binding energy; at this energy, it isolates from the main valence band and forms the HOMO state. This indicates that the HOMO state is localized in the guanine base, as claimed by valence and core photoemissions and expected from theoretical predictions. In addition, the XAS and XES profiles of the guanine dinucleotide indicate that disruption of the aromatic character of the six-membered ring results in the localization of the pi state at the imine (-N=) site of the guanine base; this may favor charge transfer among stacked guanine bases and further influence the conductivity of DNA.     

Evaluation of energy transfer in perylene-cored anthracene dendrimers

Quantitative evaluation of F?rster-type fluorescence resonance energy transfer (FRET) was undertaken by statistical investigations on perylene-cored anthracene dendrimers.     

Time dependent density functional theory calculations for electronic circular dichroism spectra and optical rotations of conformationally flexible chiral donor-acceptor dyad

Twelve conformations of a chiral donor-acceptor (charge-transfer) dyad and six conformations of its dimer complex were structurally optimized by using the Kohn-Sham density functional theory (BLYP/TZV2P) incorporating a recently developed empirical correction scheme that uses C6/R6 potentials for van der Waals interactions (DFT-D). Subsequent time-dependent DFT calculations with BH-LYP and B3-LYP functionals (with triple-zeta basis set) were performed to obtain theoretical circular dichroism (CD) spectra. The experimental CD spectra obtained independently were properly reproduced by averaging the calculated spectra of individual conformers according to a Boltzmann population derived from single-point SCS-MP2 energies. The optical rotations of the monomer were also calculated by using the same functionals with an aug-cc-pVDZ basis set. Dielectric continuum solvation models (COSMO) applied to correct the relative energies from the isolated molecule calculations resulted in conformer distributions that piled the same or even poorer level of agreement with the experimental CD spectrum. Our results clearly show the advantage of the DFT-D method for the geometry optimization of large systems with donor-acceptor interactions and the TD-DFT/BH-LYP calculations for reproducing the experimental CD spectra. As compared with the calculated optical rotations, the wealthy information embedded in the experimental/calculated CD spectra is requisite for the configurational and/or conformational analyses of relatively large and flexible chiral organic molecules in solution.     

Control of chirality by cations in confined spaces: Photooxidation of enecarbamates inside zeolite supercages

On photooxygenation of the optically active Z/E enecarbamates 1 (X = i-Pr) and 2 (X = Me) equipped with the oxazolidinone chiral auxiliary in methylene-blue (MB)-incorporated, alkali-metal (M = Li, Na, K, Cs, Rb), exchanged Y-type zeolites (MY-MB), oxidative cleavage of the alkenyl functionality releases the enantiomerically enriched methyldesoxybenzoin (MDB) product. The extent (%ee) and/or the sense (R or S) of the stereoselectivity in the formation of the MDB product depends on the choice of the alkyl substiuent (i-Pr or Me) at the C-4 position of the oxazolidinone chiral auxiliary, the Z/E configuration of the alkene functionality in the enecarbamates, and the type of alkali metal in the zeolite. Most significantly-the highlight of this study-is the reversed sense (R or S) in the stereoselection when the photooxygenation is run in CDCl3 solution versus inside the MY-MB zeolite. As a mechanistic rationale for this novel stereochemical behavior, we propose the combined action of spatial confinement and metal-ion coordination (assessed by density-functional calculations) of the substrate within the zeolite supercage, both of which greatly reduce the freedom of the substrate and entropically manipulate the stereochemical outcome.     

Sequential formation of a ternary complex among dihexylammonium, cucurbit[6]uril, and cyclodextrin with positive cooperativity

[STRUCTURE: SEE TEXT] A unique ternary 1:1:1 cucurbit[6]uril (CB[6])-cyclodextrin (CD)-dihexylammonium (DHA) complex was designed and noncovalently synthesized in stepwise fashion: first, CB[6] interacts strongly with DHA to form a 1:1 complex; second, addition of CD into the solution of the 1:1 complex leads to the exclusive formation of the 1:1:1 ternary complex. The ternary complex was characterized by various experimental techniques including ITC, NMR, and ESI-MS.     

Supramolecular chiral recognition by bischlorins: a two-point interaction mode combined with the host's conformational modulation controlled by the guest's stereochemistry and bulkiness

[reaction: see text] Supramolecular chiral recognition based on two-point host-guest interactions coupled with the different host's conformational response using the enantiopure bischlorin hosts and different antipodal amine guests is reported. The bulkiness at the guest's stereogenic center controls the chiral recognition properties resulting in switching of the enantioselectivity.     

Simple, chemoselective, and diastereoselective Reformatsky-type synthesis of α-bromo-α-fluoro-β-lactams

The chemoselective and diastereoselective synthesis of syn-α-bromo-α-fluoro-β-lactams was achieved using the diethylzinc-mediated Reformatsky-type reaction of ethyl dibromofluoroacetate with imines. The reaction led to diastereomerically pure β-lactams in good to moderate yields (up to 78% yield) with only small amounts of aziridine derivatives. Noncyclized 3-amino-2-bromo-2-fluoro carboxylic esters, usual Reformatsky adducts, were not formed. In contrast, reactions carried out under typical Reformatsky conditions using zinc metal were poorly chemoselective, leading to mixtures of β-lactams and aziridine derivatives.     

Development of a new electron ionization/field ionization ion source for gas chromatography/time‐of‐flight mass spectrometry

We have developed a combined EI/FI source for gas chromatography/orthogonal acceleration time‐of‐flight mass spectrometry (GC/oaTOFMS). In general, EI (electron ionization) and FI (field ionization) mass spectra are complementary: the EI mass spectrum contains information about fragment ions, while the FI mass spectrum contains information about molecular ions. Thus, the comparative study of EI and FI mass spectra is useful for GC/MS analyses. Unlike the conventional ion sources for FI and EI measurements, the newly developed source can be used for both measurements without breaking the ion source vacuum or changing the ion source. Therefore, the combined EI/FI source is more preferable than the conventional EI or FI ion source from the viewpoint of the reliability of measurements and facility of operation. Using the combined EI/FI source, the complementarity between EI and FI mass spectra is demonstrated experimentally with n‐hexadecane (100 pg): characteristic fragment ions for the n‐alkane such as m/z 43, 57, 71, and 85 are obtained in the EI mass spectrum, while only the parent peak of m/z 226 (M⁺) without any fragment ions is observed in the FI mass spectrum. Moreover, the field desorption (FD) measurement is also demonstrated with poly(ethylene glycol)s M600 (10 ng) and M1000 (15 ng). Signals of [M+H]⁺, [M+Na]⁺ and [M+K]⁺ are clearly detected in the FD mass spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

Transfer impedance and effectiveness of SMA receptacle for wideband measurement of discharge current due to human ESD

In order to investigate the effectiveness of an SMA receptacle as wideband measurement electrode for human ESD, we derived the transfer impedance of a 50-Ω SMA receptacle, and measured its frequency characteristics from 300 kHz to 20 GHz. With a 12-GHz digital oscilloscope, measurement of discharge currents through a hand-held metal bar from a charged human was made, and thereby the injected currents on the SMA receptacle were reconstructed from the measured transfer impedance. The results show that at a charge voltage of 1500 V the reconstructed current waveform agrees well with the observed voltage waveform divided by 50 Ω.     

Recognition of Multiple Methyl Groups on Aromatic Rings by a Polyaromatic Cavity

The methyl group is a small substituent, usually showing relatively weak or no interactions with other functional groups and metal ions. Herein, we present the recognition of the number of methyl groups on synthetic and natural aromatic compounds (i.e., benzene and xanthine derivatives, respectively) by the 1 nm‐sized polyaromatic cavity of a coordination capsule in water. Detailed competitive encapsulation experiments as well as X‐ray crystallographic analysis revealed that multiple guest–host CH₃–polyaromatic interactions in the confined nanospace are key driving forces for the high selectivity.