Direct Blue 71 staining as a destaining‐free alternative loading control method for Western blotting

In Western blotting, a suitable loading control is indispensable for correcting errors in the total amount of loaded protein. Immunodetection of housekeeping proteins and total protein staining have traditionally been used as loading control methods. Direct Blue 71 (DB71) staining—a novel, sensitive, dye‐binding staining method compatible with immunodetection—may offer advantages over these traditional loading control methods. Three common neuroscientific samples (human plasma, human oligodendrocytes, and rat brain) were employed to assess DB71 staining as a loading control method for Western blotting. DB71, CBB, one traditional housekeeping protein, and one protein of interest were comparatively assessed for reliability and repeatability and linear dynamic range over 2.5–40 μg of protein loaded. DB71's effect on the reliability and repeatability and linear dynamic range of immunoreaction were also assessed. Across all three sample types, DB71 was either equivalent or superior to CBB and housekeeping protein‐based methods in terms of reliability and repeatability and linear dynamic range. Across all three sample types, DB71 staining did not impair the reliability and repeatability or linear dynamic range of immunoreaction. Our results demonstrate that the DB71 staining can be used as a destaining‐free alternative loading control method for Western blotting.     

Characterization of a hybrid dielectrophoresis and immunocapture microfluidic system for cancer cell capture

The capture of circulating tumor cells (CTCs) from cancer patient blood enables early clinical assessment as well as genetic and pharmacological evaluation of cancer and metastasis. Although there have been many microfluidic immunocapture and electrokinetic techniques developed for isolating rare cancer cells, these techniques are often limited by a capture performance tradeoff between high efficiency and high purity. We present the characterization of shear‐dependent cancer cell capture in a novel hybrid DEP–immunocapture system consisting of interdigitated electrodes fabricated in a Hele‐Shaw flow cell that was functionalized with a monoclonal antibody, J591, which is highly specific to prostate‐specific membrane antigen expressing prostate cancer cells. We measured the positive and negative DEP response of a prostate cancer cell line, LNCaP, as a function of applied electric field frequency, and showed that DEP can control capture performance by promoting or preventing cell interactions with immunocapture surfaces, depending on the sign and magnitude of the applied DEP force, as well as on the local shear stress experienced by cells flowing in the device. This work demonstrates that DEP and immunocapture techniques can work synergistically to improve cell capture performance, and it will aid in the design of future hybrid DEP–immunocapture systems for high‐efficiency CTC capture with enhanced purity.     

A fast parallel clustering algorithm for molecular simulation trajectories

We implemented a GPU‐powered parallel k‐centers algorithm to perform clustering on the conformations of molecular dynamics (MD) simulations. The algorithm is up to two orders of magnitude faster than the CPU implementation. We tested our algorithm on four protein MD simulation datasets ranging from the small Alanine Dipeptide to a 370‐residue Maltose Binding Protein (MBP). It is capable of grouping 250,000 conformations of the MBP into 4000 clusters within 40 seconds. To achieve this, we effectively parallelized the code on the GPU and utilize the triangle inequality of metric spaces. Furthermore, the algorithm's running time is linear with respect to the number of cluster centers. In addition, we found the triangle inequality to be less effective in higher dimensions and provide a mathematical rationale. Finally, using Alanine Dipeptide as an example, we show a strong correlation between cluster populations resulting from the k‐centers algorithm and the underlying density. © 2012 Wiley Periodicals, Inc.     

TargetATPsite: A template‐free method for ATP‐binding sites prediction with residue evolution image sparse representation and classifier ensemble

Understanding the interactions between proteins and ligands is critical for protein function annotations and drug discovery. We report a new sequence‐based template‐free predictor (TargetATPsite) to identify the Adenosine‐5′‐triphosphate (ATP) binding sites with machine‐learning approaches. Two steps are implemented in TargetATPsite: binding residues and pockets predictions, respectively. To predict the binding residues, a novel image sparse representation technique is proposed to encode residue evolution information treated as the input features. An ensemble classifier constructed based on support vector machines (SVM) from multiple random under‐samplings is used as the prediction model, which is effective for dealing with imbalance phenomenon between the positive and negative training samples. Compared with the existing ATP‐specific sequence‐based predictors, TargetATPsite is featured by the second step of possessing the capability of further identifying the binding pockets from the predicted binding residues through a spatial clustering algorithm. Experimental results on three benchmark datasets demonstrate the efficacy of TargetATPsite. © 2013 Wiley Periodicals, Inc.     

THE USE OF CARBOXYMETHYL ETHOXYLATE SURFACTANT TO DISSOLVE VITAMIN K1 AND TO OBTAIN LOW INTERFACIAL TENSION AND STABLE EMULSION SYSTEMS

Abstract

The presence of vitamin K₁ in human body is important for preventing the hemorrhagic disease. Due to its very long side chain, vitamin K₁ is highly insoluble in water. We have successfully dissolve a substantial amount of vitamin K₁ in solutions of a commercial surfactant containing carboxymethyl ethoxylates (Hüls B433) and obtained low interfacial tension (IFT) and stable emulsion systems. This paper will present the details of these experiments. The solubilization of vitamin K₁ was estimated from UV absorption. The IFT values were measured by using a spinning drop apparatus and all particle sizes were determined by using laser light scattering. By using the Hüls B433 surfactant and an optimum amount of CaCl₂, we can dissolve vitamin K₁ in water and obtain low IFT systems in the order of 10^?2 dyne/cm. The emulsions obtained in these systems are stable and contain droplet sizes below 65 nm. The dissolution of vitamin K₁ and the IFT behavior in these systems follow the rules for crude oil and prefer larger surfactant micelles.     

Study of Spontaneous Imbibition of Water by Oil-Wet Sandstone Cores Using Different Surfactants

The mechanism of spontaneous imbibition of water by sandstone cores and the relationship between reservoir wettability and imbibition recovery were studied by investigating factors influencing the spontaneous imbibition of different surfactants by oil-wet sandstone cores. Ultimate oil recovery of cores using the cationic surfactant CTAB was higher than that of the cores using the nonionic surfactant TX-100 and the anionic surfactant POE (1) at the same concentration. For CTAB and TX-100, the ultimate oil recovery by spontaneous imbibition increased with increase in surfactant concentration. In regard to imbibition recovery, TX-100 and POE(1) at high temperatures were superior to those at low temperatures. Ultimate oil recovery of the high-permeability core was higher than that of the low-permeability core at room temperature. According to changes in the driving force during the imbibition process, the imbibition curve could be divided into three regions: (1) mainly capillary force, (2) both capillary and gravity forces, and (3) mainly gravity force. The stronger the hydrophilicity of the rock surface, the higher the spontaneous imbibition recovery.     

Mechanism and Influencing Factors of Wettability Alteration of Water-Wet Sandstone Surface by CTAB

Different experimental methods including ellipsometry, zeta potential measurements, imbibition studies, and contact angle measurements were used to study the mechanism and influencing factors of wettability alteration of water-wet sandstone surface caused by CTAB (hexadecyl trimethyl ammonium bromide). Results show that when the concentration of CTAB reaches a certain level (below CMC), due to the electrostatic attraction between the positively charged head groups of CTAB and the negatively charged sandstone surface, the monolayer of CTAB is formed and hydrophobic chains of CTAB molecules are toward the aqueous phase, making the solid surface oil-wet. When the concentration of CTAB continues to increase (above CMC), due to the hydrophobic interaction, the compact bilayer of CTAB is formed and hydrophilic head groups of CTAB molecules are toward the aqueous phase, rendering the solid surface water-wet. The contact angles between the oil–water interface and the surface treated with CTAB increase with the increase of the concentration of NaCl and CaCl_2. Compared to NaCl, the inorganic salt CaCl₂ has a greater impact on the contact angle. In addition, the contact angles increase with the increase of temperature and decrease with the increase of pH value of the aqueous solution.     

Noncovalent Functionalization of Multiwalled Carbon Nanotubes by Anionic Polymer Poly(Sodium 4‐Styrenesulfonate) in Water

We have found that polymer poly (sodium 4‐styrenesulfonate) (PSS) is a facile and effective polymer to assist in the dispersion of MWCNTs in aqueous solutions. With the increase of the concentration of PSS solutions, the dispersibility of MWCNTs in PSS solution increases. Cast films of MWCNTs/PSS (2 wt.%) on GC electrode show a typical redox couple at scan rate of 1 V/s in phosphate buffer solution, indicating good electrical conductivity.     

Redispersibility of Acrylate Polymer Powder and Stability of Its Reconstituted Latex

The acrylate redispersible polymer powder (RPP) was produced from acrylate latex via spray drying, which was synthesized by latex polymerization with the configuration of soft core and hard shell. The powder's redispersibility and stability of its reconstituted latex were achieved through incorporating monomer methacrylic acid (MAA), which has functional carboxyl group and can provide an ionization effect in alkaline range. The influence of pH value and MAA amount on the redispersibility and stability were studied. The stabilization mechanism for reconstituted latex was also investigated. The acrylate RPP has good redispersibility at MAA of 4–5% and pH values between 9.0 and 10.0. The reconstituted latex is stable at these conditions due to high zeta potential and strong electrostatic repulsion force.     

LiCoO2 Hollow Nanofibers by Co‐Electrospinning Sol‐Gel Precursor

LiCoO₂ xerogel hollow nanofibers were first prepared by co‐electrospinning the sol precursor, and the polycrystalline LiCoO₂ hollow nanofibers were obtained after calcination of the xerogel fibers. The obtained hollow nanofibers made up of 20～30 nm nanocrystals were about 100 nm to several micrometers in outer diameter. The hollow nanofibers were detected by means of SEM, TEM, TG, DSC, FTIR, and XRD techniques.