Simple and sensitive quantification of bioactive peptides in biological matrices using liquid chromatography/selected reaction monitoring mass spectrometry coupled with trichloroacetic acid clean-up

A simple and sensitive liquid chromatography/electrospray ionization tandem mass spectrometric (LC/ESI-MS/MS) method has been developed for the quantification of bioactive peptides in biological fluids. The method employs protein precipitation with 4% trichloroacetic acid (TCA) and selected reaction monitoring (SRM) using an immonium ion as the product ion. This method was applied to determine the synthetic parathyroid hormone (PTH) analog (MW 1721) in rat plasma and human hepcidin-25 (MW 2789) in human serum. TCA clean-up showed a sufficient recovery for peptides with a MW of less than 3000, and would be useful as a simple and rapid method because of direct injection of the supernatant without evaporation or dilution. In addition, TCA clean-up allowed us not only to reduce sample preparation time, but also to select an immonium ion as a product ion of SRM, which led to detection more sensitive than SRM using other types of product ions. The lower limits of quantitation (LLOQs) of the PTH analog and the human hepcidin-25 were 0.2 ng/mL and 5 ng/mL, respectively. This method was fully validated with acceptable linearity, intra- and inter-assay precisions, and accuracy. Furthermore, this simple and rapid method is applicable to pharmacokinetic studies.     

Rational Design for Rotaxane Synthesis through Intramolecular Slippage: Control of Activation Energy by Rigid Axle Length

We describe a new concept for rotaxane synthesis through intramolecular slippage using π‐conjugated molecules as rigid axles linked with organic soluble and flexible permethylated α‐cyclodextrins (PM α‐CDs) as macrocycles. Through hydrophilic–hydrophobic interactions and flipping of PM α‐CDs, successful quantitative conversion into rotaxanes was achieved without covalent bond formation. The rotaxanes had high activation barrier for their de‐threading, so that they were kinetically isolated and derivatized even under conditions unfavorable for maintaining the rotaxane structures. ¹H NMR spectroscopy experiments clearly revealed that the restricted motion of the linked macrocycle with the rigid axle made it possible to control the kinetic stability by adjusting the length of the rigid axle in the precursor structure rather than the steric bulkiness of the stopper unit.     

Array of aromatic amino acid side chains located near the chromophore of photoactive yellow protein

The role of the array of aromatic amino acid side chains located close to the chromophore binding loop of photoactive yellow protein (PYP) was studied using the alanine-substitution mutagenesis. Phe92, Tyr94, Phe96 and Tyr98 were replaced with alanine (F92A, Y94A, F96A and Y98A, respectively), then these mutants were characterized by UV-visible absorption spectra, circular dichroism (CD) spectra, thermal stability and photocycle kinetics. Absorption maxima of F92A, Y94A, F96A and Y98A were 444, 442, 439 and 447 nm, respectively, different to wild type (WT) at 446 nm. Far-UV CD spectra of mutants other than F92A were different from WT, indicating that Tyr94, Phe96 and Tyr98 maintain the native secondary structure of PYP. Mid-point temperatures of thermal denaturation of F92A, Y94A and F96A, estimated by the CD signal at 222 nm, were 5-10 degrees C lower than WT. Time constants of the photocycle estimated by flash-induced absorbance change were 0.36 s for WT and 1.4 s for Y98A, however, 100, 30 and 3000 times slower than WT for F92A, Y94A and F96A, respectively. Tyr98 is located in the loop region, whereas Phe92, Tyr94 and Phe96 are incorporated in the beta4 strand, showing that aromatic amino acid residues in the beta-sheet regulate the absorption spectrum, thermal stability and photocycle of PYP. Aromatic rings of Phe92, Tyr94 and Phe96 lie nearly perpendicular to the aromatic ring of Phe75 or chromophore. Possible weak hydrogen bonds between the aromatic ring hydrogen and pi-electrons of these residues are discussed.     

Enzymatic transformation of bacterial polyhydroxyalkanoates into repolymerizable oligomers directed towards chemical recycling

The enzymatic transformation into an oligomer was carried out with the objective of developing the chemical recycling of bacterial polyesters. Poly(R-3-hydroxyalkanoate)s (PHAs), such as poly[(R-3-hydroxybutyrate)-co-12%(R-3-hydroxyhexanoate)] and poly[(R-3-hydroxybutyrate)-co-12%(R-3-hydroxyvalerate)], were degraded by granulated Candida antarctica lipase B immobilized on hydrophilic silica (lipase GCA) in a diluted organic solvent at 70 degrees C. The degradation products were cyclic oligomers having a molecular weight of a few hundreds. The obtained cyclic oligomer was readily repolymerized by the same lipase (lipase GCA) to produce the corresponding polyester in a concentrated solution. The cyclic oligomer was copolymerized with epsilon-caprolactone using lipase to produce the corresponding terpolymers having an Mw of 21,000. This is the first example of the enzymatic chemical recycling of bacterial PHAs using lipase. Poly(R-3-hydroxybutyrate) [P(3HB)] was also degraded into the linear-type R-3HB monomer to trimer by P(3HB)-depolymerase (PHBDP) in phosphate buffer at 37 degrees C. The degradation using PHBDP required a longer reaction time compared with the lipase-catalyzed degradation in organic solvent. The monomer composition of the oligomer depended on the origin of the PHBDP. The R-3HB monomer was predominately produced by PHBDP from Pseudomonas stutzeri, while the R-3HB dimer was produced by PHBDP from Alcaligenes faecalis T1. Repolymerization of these oligomers by lipase in concentrated organic solvent produced a relatively low-molecular-weight P(3HB) (e.g., Mw=2,000). Degradation of P(3HB) by lipase in organic solvent into repolymerizable cyclic oligomer and degradation of P(3HB) by PHBDP in buffer into hydroxy acid type R-3HB dimer.     

The development of an automated continuous measurement system for the monitoring of HCHO and CH3CHO in the atmosphere by using an annular diffusion scrubber coupled to HPLC

An automated continuous measurement system for the monitoring of formaldehyde (HCHO) and acetaldehyde (CH₃CHO) in the urban atmosphere was developed by using an annular diffusion scrubber in conjunction with a high-performance liquid chromatograph (HPLC). With this technique, atmospheric HCHO and CH₃CHO were effectively collected by the annular diffusion scrubber which consists of a porous polytetrafluoroethylene (PTFE) tube disposed concentrically within a Pyrex-glass tube and a scrubbing solution. 2,4-Dinitrophenylhydrazine (DNPH) was selected as the scrubbing solution for collecting HCHO and CH₃CHO, which are derivatized to 2,4-dinitrophenylhydrazone-formaldehyde (DNPH-HCHO) and 2,4-dinitrophenylhydrazone-acetaldehyde (DNPH-CH₃CHO), respectively. An aliquot of the sample solution was automatically injected into an HPLC equipped with a semi-micro ODS column and a UV-VIS detector for separating and determining DNPH-HCHO and DNPH-CH₃CHO. All the operations are sequenced by a programmable controller, and automated continuous measurements are performed with a typical temporal resolution of 1 h. The collection efficiencies of HCHO and CH₃CHO were about 97% and 93%, respectively, at an air flow rate of 0.2 L/min. The lower detection limits (3σ of the blank hydrazones) of HCHO and CH₃CHO were 0.05 ppbv and 0.10 ppbv, respectively, in the case of 12-L air sample volume. Analytical response of a standard solution of DNPH-HCHO and DNPH-CH₃CHO by the HPLC during a 10-day continuous measurement was unchanged and the relative standard deviation (RSD) was < 1.0%. Interferences from O₃ and NO₂ were insignificant in this annular diffusion scrubber method. Both for HCHO and CH₃CHO measurements, concentrations from this developed system well agreed with those measured by a DNPH Silica cartridge method.     

Hydrogen-bonded networks in organic conductors: crystal structures and electronic properties of charge-transfer salts of tetracyanoquinodimethane with 4,4'-biimidazolium having multiprotonated States

[structure: see text] Novel hydrogen-bonded charge-transfer salts of TCNQ with mono- and diprotonated 4,4'-biimidazolium were synthesized in order to demonstrate the high potential of the 4,4'-biimidazole system in a molecular conductor from the viewpoint of crystal engineering and electronic modulation. Crystal structure analyses of neutral 4,4'-biimidazole and TCNQ salts revealed the formation of two types of hydrogen-bonding modes of the 4,4'-biimidazole moiety depending on the protonated states. Neutral 4,4'-biimidazole possessed a linear chain mode of hydrogen-bonding to construct two-dimensional network. In the TCNQ salt of monoprotonated 4,4'-biimidazolium, the 4,4'-biimidazole moiety formed a dimer by a complementary mode of hydrogen-bonding. In contrast, the salt of diprotonated 4,4'-biimidazolium showed a double linear chain mode of hydrogen-bonding to construct a three-dimensional network. The formation of two types of hydrogen-bonding modes made the difference in the stacking patterns of TCNQ columns and in their transport properties. The TCNQ salt of diprotonated 4,4'-biimidazolium exhibited high electrical conductivity (sigma(rt) = 1.1 x 10(-1) S cm(-1)).     

Transition-Metal Complexes with Nano-Sized Phosphine and Pyridine Ligands-Catalysis,Fluxional Behavior and Molecular Recognition

Nano-sized phosphine and pyridine ligands having tetraphenylphenyl-, m-terphenyl-, poly(benzylether) moieties were synthesized. These ligands showed a remarkable effect on homogeneous transition metal catalyzed reactions. Pd(II) complexes with tetraphenylphenyl substituted pyridine ligands show high catalytic activities for oxidation of ketones suppressing Pd black formation and maintains the catalytic activity for a long time. Rh(I) complex catalysts with m-terphenyl substituted phosphine ligands showed remarkable rate acceleration in the hydrosilylation of ketones. In addition, several phosphinocalixarene ligands were synthesized and their coordination studies with Pd(II), Pt(II), Ru(II), Ir(I), and Rh(I) metals were documented. Ir(I) and Rh(I) cationic complexes with a 1,3,5-triphosphinocalix[6]arene ligand showed dynamic behavior with size-selective molecular recognition.     

The development of an automated continuous measurement system for the monitoring of HCHO and CH3CHO in the atmosphere by using an annular diffusion scrubber coupled to HPLC

An automated continuous measurement system for the monitoring of formaldehyde (HCHO) and acetaldehyde (CH₃CHO) in the urban atmosphere was developed by using an annular diffusion scrubber in conjunction with a high-performance liquid chromatograph (HPLC). With this technique, atmospheric HCHO and CH₃CHO were effectively collected by the annular diffusion scrubber which consists of a porous polytetrafluoroethylene (PTFE) tube disposed concentrically within a Pyrex-glass tube and a scrubbing solution. 2,4-Dinitrophenylhydrazine (DNPH) was selected as the scrubbing solution for collecting HCHO and CH₃CHO, which are derivatized to 2,4-dinitrophenylhydrazone-formaldehyde (DNPH-HCHO) and 2,4-dinitrophenylhydrazone-acetaldehyde (DNPH-CH₃CHO), respectively. An aliquot of the sample solution was automatically injected into an HPLC equipped with a semi-micro ODS column and a UV-VIS detector for separating and determining DNPH-HCHO and DNPH-CH₃CHO. All the operations are sequenced by a programmable controller, and automated continuous measurements are performed with a typical temporal resolution of 1 h. The collection efficiencies of HCHO and CH₃CHO were about 97% and 93%, respectively, at an air flow rate of 0.2 L/min. The lower detection limits (3σ of the blank hydrazones) of HCHO and CH₃CHO were 0.05 ppbv and 0.10 ppbv, respectively, in the case of 12-L air sample volume. Analytical response of a standard solution of DNPH-HCHO and DNPH-CH₃CHO by the HPLC during a 10-day continuous measurement was unchanged and the relative standard deviation (RSD) was < 1.0%. Interferences from O₃ and NO₂ were insignificant in this annular diffusion scrubber method. Both for HCHO and CH₃CHO measurements, concentrations from this developed system well agreed with those measured by a DNPH Silica cartridge method. Received: 15 July 1998 / Revised: 5 October 1998 / Accepted: 7 October 1998     

Synthesis of pyrido[1′,2′:1,2]imidazo[4,5-b]pyrazines from 2,3-dichloro-5,6-dicyanopyrazine with 2-aminopyridines

Novel synthesis of the title compounds by the facile cyclization between 2,3-dichloro-5,6-dicyanopyrazine and various 2-aminopyridines under relatively mild conditions is described. The reactivity depended on the basicity of 2-aminopyridines.