Practical Methods for Solid-State NMR Distance Measurements on Large Biomolecules: Constant-Time Rotational Resonance

Simple modifications of the rotational resonance experiment substantially reduce the total experimental time needed to measure weak homonuclear dipolar couplings, a critical factor for achieving routine internuclear distance measurements in large biomolecular systems. These modifications also address several problems cited in the literature. Here we introduce a constant-time rotational resonance experiment that eliminates the need for control spectra to correct for effects from variable RF heating, particularly critical for accurate long-distance measurements. This reduces the total number of experiments needed by as much as a factor of 2. Other improvements incorporated include achieving selective inversion with a delay rather than a weak pulse (P. R. Costa et al., J. Am. Chem. Soc. 119, 10487-10493, 1997), which we observe results in the elimination of oscillations in peak intensities for short mixing time points. This reduces the total experiment time in two ways. First, there is no longer a need to average different "zero"-time points (S. O. Smith et al., Biochemistry 33, 6334-6341, 1994) to correct for intensity variations. Second, short-mixing-time lineshape differences observed in large membrane-bound proteins only appear with the weak-pulse inversion and not when using the delay inversion. Consistent lineshapes between short and long mixing times permit the use of a single spectrum for subtraction of natural abundance background signals from all labeled-protein time points. Elimination of these effects improves the accuracy and efficiency of rotational resonance internuclear distance measurements.     

Metal-stabilized phenoxonium cation

An unprecedented metal-stabilized phenoxonium cation was prepared by a process involving dearomatization of a phenoxy complex. The unique eta2 C=O-metal (iridium) coordination mode leaves the positive charge delocalized within the former aromatic ring. The X-ray structure and conversion into eta2 C=O-coordinated metal-quinone complex are described.     

Psychology and Mathematics Education

This article analyzes the relation between cognitive psychology, as a broad theoretical framework, and the psychology of mathematics education. It is argued that mathematics education should not simply “borrow” from cognitive psychology; rather, our discipline should provide its own psychological research problems, its adapted investigation strategies, and even, in certain circumstances, its adequate original concepts. It is argued that the didactical orientation of its research endeavors highlights new, original theoretical and applicative perspectives, perspectives that cognitive psychology cannot provide by itself. Some examples are described that emphasize the difference between the broad cognitive approach and that of the psychology of mathematics education.     

Steric and Electronic Effects on an Antibody‐Catalyzed Diels–Alder Reaction

A series of substituted thiophene dioxides was tested as diene substrates for the antibody 1E9, which was elicited with a hexachloronorbornene derivative and normally catalyzes the inverse electron‐demand Diels–Alder reaction between 2,3,4,5‐tetrachlorothiophene dioxide (TCTD) and N‐ethylmaleimide (NEM). Previous structural and computational studies had suggested that the catalytic efficiency of this system derives in part from a very snug fit between the apolar active site and the transition state of this reaction. Nevertheless, replacing all the Cl‐atoms in the hapten with Br‐atoms leads to no loss in affinity (K_d=0.1 nM ), indicating substantial conformational flexibility in the residues that line the binding pocket. Consistent with this observation, the 2,3,4,5‐tetrabromothiophene dioxide is a good substrate for the antibody (k_cat=1.8 min^?1, K_NEM=14 μM ), despite being considerably larger than TCTD. In contrast, normal electron‐demand Diels–Alder reactions between NEM and unsubstituted thiophene dioxide or 2,3,4,5‐tetramethylthiophene dioxide, which are much smaller or nearly isosteric with TCTD, respectively, are not detectably accelerated. These results show that the electronic properties of the 1E9 active site are optimized to a remarkable degree for the inverse electron‐demand Diels–Alder reaction for which it was designed. Indeed, they appear to play a more important role in catalysis than simple proximity effects.     

Solvability of a Class of Braided Fusion Categories

We show that a weakly integral braided fusion category ${{\mathcal C}}$ such that every simple object of ${{\mathcal C}}$ has Frobenius-Perron dimension ≤?2 is solvable. In addition, we prove that such a fusion category is group-theoretical in the extreme case where the universal grading group of ${{\mathcal C}}$ is trivial.     

Soy addition improves the texture of microwavable par-baked pocket-type flat doughs

Microwavable baked goods are used frequently by the food industry to enrobe meat, vegetable, and sweet items for convenient meal delivery but suffer from poor texture upon microwave re-heating. Par-baking the dough prior to the reheating stage provides an opportunity to supply fresh baked goods with a simple baking stage at retail locations. Nonetheless, reheating conditions significantly affect texture of reheated par-baked products, resulting in shrinkage, porosity reduction, and crust softening. Appropriate formula modifications have been shown to reduce microwave-induced toughness of reheated bread by virtue of water-binding agents and lipids. The objective of this study was, therefore, to assess the effect of soy addition on the water state of microwavable par-baked doughs. Four dough formulations were developed by substituting wheat flour with increasing amounts of a soy blend. Addition of soy at 20 and 26% levels improved textural properties of microwaved products, resulting in a softer and less chewy texture. Thermogravimetric analysis (TG) showed increased water binding in soy formulations 20 and 26% with a broadening of the main peak (attributed to water loss) that shifted from 40 to 80 °C. Differential scanning calorimetry (DSC) depicted a transition in the −25/−10 °C range, attributed to soy lipids melting, which broadened at high soy addition. This change in water dynamics was confirmed by proton nuclear magnetic resonance (¹H NMR) relaxation tests, T ₁ and T ₂, having lower values in soy products, and therefore, depicting a more solid-like matrix. Soy addition above 20% significantly improved the texture of microwave reheated par-baked flat doughs.     

Dynamic storage allocation with known durations

This paper is concerned with a new version of on-line storage allocation in which the durations of all processes are known at their arrival time. This version of the problem is motivated by applications in communication networks and has not been studied previously. We provide an on-line algorithm for the problem with a competitive ratio of O(min{log Δ,log τ}), where Δ is the ratio between the longest and shortest duration of a process, and τ is the maximum number of concurrent active processes that have different durations. For the special case where all durations are powers of two, the competitive ratio achieved is O(loglog Δ).     

Antibacterial and antifungal LDPE films for active packaging

Active antimicrobial packaging is a promising form of active packaging that can kill or inhibit microorganism growth in order to maintain product quality and safety. One of the most common approaches is based on the release of volatile antimicrobial agents from the packaging material such as essential oils. Due to their highly volatile nature, the challenge is to preserve the essential oils during the high‐temperature melt processing of the polymer, while maintaining high antimicrobial activity for a desired shelf life. This study suggests a new approach in order to achieve this goal. Antimicrobial active films are developed based on low‐density polyethylene (LDPE), organo‐modified montmorillonite clays (MMT) and carvacrol (used as an essential oil model). In order to minimize carvacrol loss throughout the polymer compounding, a pre‐compounding step is developed in which clay/carvacrol hybrids are produced. The hybrids exhibit a significant increase in the d‐spacing of clay and enhanced thermal stability. The resulting LDPE/(clay/carvacrol) films exhibit superior and prolonged antibacterial activity against Escherichia coli and Listeria innocua, while polymer compounded with pure carvacrol loses the antibacterial properties within days. The films also present an excellent antifungal activity against Alternaria alternata, used as a model plant pathogenic fungus. Furthermore, infrared spectroscopy analysis of the LDPE/(clay/carvacrol) system displayed significantly higher carvacrol content in the film as well as a slower out‐diffusion of the carvacrol molecules in comparison to LDPE/carvacrol films. Thus, these new films have a high potential for antimicrobial food packaging applications due to their long‐lasting and broad‐spectrum antimicrobial efficacy. Copyright © 2014 John Wiley & Sons, Ltd.     

Influence of natural organic matter on the screening of pharmaceuticals in water by using liquid chromatography with full scan mass spectrometry

The influence of natural organic matter on the screening of pharmaceuticals in water was determined by using high resolution liquid chromatography (HRLC) combined with full scan mass spectrometry (MS) techniques like time of flight (ToF) or Orbitrap MS. Water samples containing different amount of natural organic matter (NOM) and residues of a set of 11 pharmaceuticals were analyzed by using Exactive Orbitrap? LC-MS. The samples were screened for residues of pharmaceuticals belonging to different classes like benzimidazoles, macrolides, penicillins, quinolones, sulfonamides, tetracyclines, tranquillizers, non-steroidal anti-inflammatory drugs (NSAIDs), anti-epileptics and lipid regulators. The method characteristics were established over a concentration range of 0.1-500 μg L(-1). The 11 pharmaceuticals were added to two effluent and two influent water samples. The NOM concentration within the samples ranged from 2 to 8 mg L(-1) of dissolved organic carbon. The HRLC-Exactive Orbitrap? LC-MS system was set at a resolution of 50,000 (FWHM) and this selection was found sufficient for the detection of the list of pharmaceuticals. With this resolution setting, accurate mass measurements with errors below 2 ppm were found, despite of the NOM concentration of the different types of water samples. The linearities were acceptable with correlation coefficients greater than 0.95 for 30 of the 51 measured linearities. The limit of detection varies between 0.1 μg L(-1)and 100 μg L(-1). It was demonstrated that sensitivity could be affected by matrix constituents in both directions of signal reduction or enhancement. Finally it was concluded that with direct shoot method used (no sample pretreatment) all compounds, were detected but LODs depend on matrix-analyte-concentration combination. No direct relation was observed between NOM concentration and method characteristics. For accurate quantification the use of internal standards and/or sample clean-up is necessary. The direct shoot method is only applicable for qualitative screening purposes. The use of full scan MS makes it possible to search for unknown contaminants. With the use of adequate software and a database containing more than 50,000 entries a tool is available to search for unknowns.