‘Fixed charge’ chemical derivatization and data dependant multistage tandem mass spectrometry for mapping protein surface residue accessibility

Protein surface accessible residues play an important role in protein folding, protein-protein interactions and protein-ligand binding. However, a common problem associated with the use of selective chemical labeling methods for mapping protein solvent accessible residues is that when a complicated peptide mixture resulting from a large protein or protein complex is analyzed, the modified peptides may be difficult to identify and characterize amongst the largely unmodified peptide population (i.e., the ‘needle in a haystack’ problem). To address this challenge, we describe here the development of a strategy involving the synthesis and application of a novel ‘fixed charge’ sulfonium ion containing lysine-specific protein modification reagent, S,S′-dimethylthiobutanoylhydroxysuccinimide ester (DMBNHS), coupled with capillary HPLC-ESI-MS, automated CID-MS/MS, and data-dependant neutral loss mode MS³ in an ion trap mass spectrometer, to map the surface accessible lysine residues in a small model protein, cellular retinoic acid binding protein II (CRABP II). After reaction with different reagent:protein ratios and digestion with Glu-C, modified peptides are selectively identified and the number of modifications within each peptide are determined by CID-MS/MS, via the exclusive neutral loss(es) of dimethylsulfide, independently of the amino acid composition and precursor ion charge state (i.e., proton mobility) of the peptide. The observation of these characteristic neutral losses are then used to automatically ‘trigger’ the acquisition of an MS³ spectrum to allow the peptide sequence and the site(s) of modification to be characterized. Using this approach, the experimentally determined relative solvent accessibilities of the lysine residues were found to show good agreement with the known solution structure of CRABP II.     

Synthesis and structure determination of pyrazine-containing macrocyclic polyazomethines

<正>Two pyrazine-contairting macrocyclic polyazomethines 2 and 3 were synthesized by direct[2 + 2]and[3 + 3]condensation reactions between 2,2'-[pyrazine-2,3-diylbis(oxy)]dibenzaldehyde(1) and hydrazine.Both 2 and 3 were characterized by NMR, HRMS,and their structures were determined via X-ray crystal diffraction studies.     

Adsorption of uranium ions from aqueous solution by amine-group functionalized magnetic Fe3O4 nanoparticle

The magnetic Fe₃O₄ nanoparticle was functionalized by covalently grafting amine group with (3-aminopropyl) trimethoxy silane, and the Fe₃O₄–NH₂ nanoparticle and the Fe₃O₄ nanoparticle were characterized by Fourier transform infrared, and X-ray diffraction. And the results indicated the amine-group was immobilized successfully on the surface of Fe₃O₄. The adsorption behavior of uranium from aqueous solution by the Fe₃O₄ nanoparticle and the Fe₃O₄–NH₂ nanoparticle was investigated using batch experiments. The pH of initial aqueous solution at 5.0 and 6.0 were in favour of adsorption of uranium, and the adsorption percentage of uranium by the Fe₃O₄ nanoparticle and the Fe₃O₄–NH₂ nanoparticle were 81.2 and 95.6 %, respectively. In addition, the adsorption of uranium ions could be well-described by the Langmuir, Freundlich isotherms and pseudo-second kinetic models. The monolayer adsorption maximum capacity of the Fe₃O₄ nanoparticle and the Fe₃O₄–NH₂ nanoparticle were 85.35 and 268.49 mg/g at 298.15 K, respectively, which indicate the adsorption capacity the Fe₃O₄ nanoparticle was improved by amine functionalization.     

Versatile Iridicycle Catalysts for Highly Efficient and Chemoselective Transfer Hydrogenation of Carbonyl Compounds in Water

Cyclometalated iridium complexes are shown to be highly efficient and chemoselective catalysts for the transfer hydrogenation of a wide range of carbonyl groups with formic acid in water. Examples include α‐substituted ketones (α‐ether, α‐halo, α‐hydroxy, α‐amino, α‐nitrile or α‐ester), α‐keto esters, β‐keto esters and α,β‐unsaturated aldehydes. The reduction was carried out at substrate/catalyst ratios of up to 50 000 at pH 4.5 and required no organic solvent. The protocol provides a practical, easy and efficient way for the synthesis of β‐functionalised secondary alcohols, such as β‐hydroxyethers, β‐hydroxyamines and β‐hydroxyhalo compounds, which are valuable intermediates in pharmaceutical, fine chemical, perfume and agrochemical synthesis.     

Pestalustaines A and B,unprecedented sesquiterpene and coumarin derivatives from endophytic fungus Pestalotiopsis adusta

Pestalustaines A (1) and B (2), one unique sesquiterpene possessing an unusual 5/6/7-fused tricyclic ring system and one unprecedented coumarin derivative bearing 6/6/5/5-fused tetracyclic ring system, were isolated from the plant-derived Pestalotiopsis adusta. Their structures with absolute configurations were established by extensive NMR analysis, X-ray crystallography, and CD spectra associated with TD-DFT calculation. Hypothetical biosynthetic pathways for compounds 1 and 2 are proposed. Compounds 1 and 2 showed weak to moderate cytotoxic activities against three human tumor cell lines HeLa, HCT116, and A549, whose IC₅₀ values were ranged from 21.01 to 55.43?μM.     

Highly photoluminescent MoOx quantum dots: Facile synthesis and application in off-on Pi sensing in lake water samples

Molybdenum oxide (MoO_x) is a well-studied transition-metal semiconductor material, and has a wider band gap than MoS₂ which makes it become a promising versatile probe in a variety of fields, such as gas sensor, catalysis, energy storage ect. However, few MoO_x nanomaterials possessing photoluminescence have been reported until now, not to mention the application as photoluminescent probes. Herein, a one-pot method is developed for facile synthesis of highly photoluminescent MoO_x quantum dots (MoO_x QDs) in which commercial molybdenum disulfide powder and hydrogen peroxide (H₂O₂) are involved as the precursor and oxidant, respectively. Compared with current synthesis methods, the proposed one has the advantages of rapid, one-pot, easily prepared, environment friendly as well as strong photoluminescence. The obtained MoO_x QDs is further utilized as an efficient photoluminescent probe, and a new off-on sensor has been constructed for phosphate (Pi) determination in complicated lake water samples, attributed to the fact that the binding affinity of Eu³⁺ ions to the oxygen atoms from Pi is much higher than that from the surface of MoO_x QDs. Under the optimal conditions, a good linear relationship was found between the enhanced photoluminescence intensity and Pi concentration in the range of 0.1–160.0 μM with the detection limit of 56 nM (3σ/k). The first application of the photoluminescent MoO_x nanomaterials for ion photochemical sensing will open the gate of employing MoO_x nanomaterials as versatile probes in a variety of fields, such as chemi-/bio-sensor, cell imaging, biomedical and so on.     

π-Interactions between Cyclic Carbocations and Aromatics Cause Zeolite Deactivation in Methanol-to-Hydrocarbon Conversion

The understanding of catalyst deactivation represents one of the major challenges for the methanol-to-hydrocarbon (MTH) reaction over acidic zeolites. Here we report the critical role of intermolecular π-interactions in catalyst deactivation in the MTH reaction on zeolites H-SSZ-13 and H-ZSM-5. π-interaction-induced spatial proximities between cyclopentenyl cations and aromatics in the confined channels and/or cages of zeolites are revealed by two-dimensional solid-state NMR spectroscopy. The formation of naphtalene as a precursor to coke species is favored due to the reaction of aromatics with the nearby cyclopentenyl cations and correlates with both acid density and zeolite topology.     

A Polypyridyl‐Based Layered Complex as Dual‐Functional Co‐catalyst for Photo‐Driven Organic Dyes Degradation and Water Splitting

With the ever‐increasing concerns on environmental pollution and energy crisis, it is of great urgency to develop high‐performance photocatalyst to eliminate organic pollutants from wastewater and produce hydrogen via water splitting. Herein, a polypyridyl‐based mixed covalent Cu^I/II complex with triangular {Cu₃} and rhombic {Cu₂Cl₄} subunits alternately extended by mixed SCN^– and Cl^– heterobridges [Cu₄(DNP)(SCN)Cl₄]_n ( 1 ) [DNP = 2,6‐bis(1,8‐naphthyridine‐2‐yl)pyridine] was solvothermally synthesized and employed as a dual‐functional co‐photocatalyst. Resulting from a narrowed band‐gap of 1.07 eV with suitable redox potential and unsaturated Cu^I/II sites, the complex together with H₂O₂ can effectively degrade Rhodamine B and methyl orange up to 87.4 and 88.2 %, respectively. Meanwhile, the complex mixed with H₂PtCl₆ can also accelerate the photocatalytic water splitting in the absence of a photosensitizer with the hydrogen production rate of 27.5 μmol · g^–1 · h^–1. These interesting findings may provide informative hints for the design of the multiple responsive photocatalysts.     

Non‐3d Metal Modulation of a Cobalt Imidazolate Framework for Excellent Electrocatalytic Oxygen Evolution in Neutral Media

Cobalt imidazolate frameworks are classical electrocatalysts for the oxygen evolution reaction (OER) but suffer from the relatively low activity. Here, a non‐3d metal modulation strategy is presented for enhancing the OER activity of cobalt imidazolate frameworks. Two isomorphous frameworks [Co₄(MO₄)(eim)₆] (M=Mo or W, Heim=2‐ethylimidazole) having Co(eim)₃(MO₄) units and high water stabilities were designed and synthesized. In different neutral media, the Mo‐modulated framework coated on a glassy carbon electrode shows the best OER performances (1 mA cm^?2 at an overpotential of 210 mV in CO₂‐saturated 0.5 m KHCO₃ electrolyte and 2/10/22 mA cm^?2 at overpotential of 388/490/570 mV in phosphate buffer solution) among non‐precious metal catalysts and even outperforms RuO₂. Spectroscopic measurements and computational simulations revealed that the non‐3d metals modulate the electronic structure of Co for optimum reactant/product adsorption and tailor the energy of rate‐determining step to a more moderate value.